C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sad1 and UNC84 domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405018 SUN2-002 ENSG00000100242 9606 - 22:38734736-38755999 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartLiverLungMuscleOvaryTestisENST00000405018
Transcript ID Adipose Bladder Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000405018 31.187±0.00 2.104±0.00 78.669±0.00 48.188±45.95 16.180±0.00 18.312±0.00 18.803±15.74 62.672±0.00 13.436±7.59 18.817±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZY CIL_0001ZY_0001 CGP 22:38685543-38738299
CIL_0002XF CIL_0002XF_0001 CGP 22:38705723-38794143
CIL_0005NJ CIL_0005NJ_0001 CGP 22:38734725-38794198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000784 IEA nuclear chromosome, telomeric region
GO:0000794 IEA condensed nuclear chromosome
GO:0005515 IPI protein binding
GO:0005521 IDA lamin binding
GO:0005635 TAS nuclear envelope
GO:0005637 IEA nuclear inner membrane
GO:0005768 IEA endosome
GO:0006998 IGI nuclear envelope organization
GO:0007052 TAS mitotic spindle organization
GO:0007097 TAS nuclear migration
GO:0008017 TAS microtubule binding
GO:0016021 IEA integral component of membrane
GO:0030335 ISS positive regulation of cell migration
GO:0031022 ISS nuclear migration along microfilament
GO:0031965 IDA nuclear membrane
GO:0034993 IDA SUN-KASH complex
GO:0042802 IPI identical protein binding
GO:0051642 ISS centrosome localization
GO:0090286 IDA cytoskeletal anchoring at nuclear membrane
GO:0090292 IDA nuclear matrix anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100439 Sun2-003 protein_coding Mus_musculus 0 1681
ENSMUST00000046259 Sun2-002 protein_coding Mus_musculus 0 1659
ENSMUST00000089311 Sun2-001 protein_coding Mus_musculus 0 1640
ENSMUST00000162392 Sun2-006 retained_intron Mus_musculus 0 859
ENSMUST00000159762 Sun2-004 retained_intron Mus_musculus 0 508
ENSMUST00000159660 Sun2-007 protein_coding Mus_musculus 0 267

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