C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THAP domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407315 THAP4-001 ENSG00000176946 9606 - 2:241584405-241637449 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407315
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407315 24.805±0.00 13.533±0.00 1.584±0.00 17.992±0.00 10.755±8.31 11.791±7.39 10.023±8.01 10.496±8.36 7.103±3.46 8.971±6.83 26.537±25.23 29.055±15.50 21.107±2.23 31.428±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U9 CIL_0004U9_0002 CGP 2:241558721-241637449
CIL_0003ST CIL_0003ST_0001 CGP 2:241584405-241673857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190116 Thap4-001 protein_coding Mus_musculus 0 1629
ENSMUST00000189173 Thap4-003 retained_intron Mus_musculus 0 1194
ENSMUST00000112905 Thap4-002 nonsense_mediated_decay Mus_musculus 0 957
ENSMUST00000189728 Thap4-006 processed_transcript Mus_musculus 0 625
ENSMUST00000189472 Thap4-005 protein_coding Mus_musculus 0 516
ENSMUST00000187445 Thap4-004 nonsense_mediated_decay Mus_musculus 9.00054e-42 176

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