C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0003ST_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000176946-ENSG00000168397 | CGP | 9606 | 2:241584405-241673857  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000168397  (ATG4B)autophagy related 4B, cysteine peptidase |
ENST00000344376 (ATG4B-005)
|
241651007-241672592 | nonsense_mediated_decay | |
|
ENST00000400771 (ATG4B-025)
|
241637710-241668221 | protein_coding | ||
|
ENST00000400772 (ATG4B-011)
|
241637626-241655330 | nonsense_mediated_decay | ||
|
ENST00000402096 (ATG4B-006)
|
241637612-241672628 | protein_coding | ||
|
ENST00000404914 (ATG4B-002)
|
241637612-241673857 | protein_coding | ||
|
ENST00000405546 (ATG4B-001)
|
241637213-241673854 | protein_coding | ||
|
ENST00000415107 (ATG4B-022)
|
241637710-241653524 | nonsense_mediated_decay | ||
|
ENST00000419606 (ATG4B-015)
|
241637693-241655306 | protein_coding | ||
|
ENST00000425239 (ATG4B-023)
|
241637707-241659448 | protein_coding | ||
|
ENST00000428861 (ATG4B-027)
|
241666596-241671366 | protein_coding | ||
|
ENST00000429899 (ATG4B-026)
|
241653467-241666769 | protein_coding | ||
|
ENST00000430617 (ATG4B-020)
|
241637729-241659187 | protein_coding | ||
|
ENST00000460211 (ATG4B-028)
|
241667812-241671569 | retained_intron | ||
|
ENST00000465399 (ATG4B-016)
|
241637693-241655444 | retained_intron | ||
|
ENST00000468018 (ATG4B-021)
|
241637697-241659200 | retained_intron | ||
|
ENST00000475195 (ATG4B-014)
|
241637693-241655002 | retained_intron | ||
|
ENST00000475693 (ATG4B-008)
|
241668259-241673849 | retained_intron | ||
|
ENST00000479554 (ATG4B-013)
|
241637693-241654705 | retained_intron | ||
|
ENST00000479941 (ATG4B-030)
|
241668169-241668860 | retained_intron | ||
|
ENST00000482507 (ATG4B-004)
|
241637698-241672631 | retained_intron | ||
|
ENST00000483778 (ATG4B-012)
|
241637662-241659772 | retained_intron | ||
|
ENST00000491867 (ATG4B-010)
|
241637620-241653333 | processed_transcript | ||
|
ENST00000493618 (ATG4B-024)
|
241637706-241659611 | retained_intron | ||
|
ENST00000494132 (ATG4B-029)
|
241670561-241671917 | retained_intron | ||
|
ENST00000494465 (ATG4B-003)
|
241637635-241672599 | retained_intron | ||
|
ENSG00000207186 (RNA5SP122) RNA, 5S ribosomal pseudogene 122 |
ENST00000384457 (RNA5SP122-201)
|
241584968-241585075 | rRNA | |
| CIL_0003ST_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000026279-ENSMUSG00000026280 | CGP | 10090 | 1:93701935-93790610 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000026279 (Thap4) THAP domain containing 4 |
ENSMUST00000112905 (Thap4-002)
|
93705390-93754864 | nonsense_mediated_decay | |
|
ENSMUST00000187445 (Thap4-004)
|
93705391-93714982 | nonsense_mediated_decay | ||
|
ENSMUST00000189173 (Thap4-003)
|
93724649-93754650 | retained_intron | ||
|
ENSMUST00000189472 (Thap4-005)
|
93714780-93749954 | protein_coding | ||
|
ENSMUST00000189728 (Thap4-006)
|
93705387-93731926 | processed_transcript | ||
|
ENSMUST00000190116 (Thap4-001)
|
93701935-93754780 | protein_coding | ||
|
ENSMUSG00000026280 (Atg4b) autophagy related 4B, cysteine peptidase |
ENSMUST00000027502 (Atg4b-001)
|
93754905-93790610 | protein_coding | |
|
ENSMUST00000135762 (Atg4b-002)
|
93755045-93788179 | retained_intron | ||
|
ENSMUST00000149436 (Atg4b-003)
|
93751500-93775683 | protein_coding | ||
|
ENSMUST00000185482 (Atg4b-010)
|
93755035-93784923 | nonsense_mediated_decay | ||
|
ENSMUST00000185754 (Atg4b-008)
|
93786218-93787899 | retained_intron | ||
|
ENSMUST00000186001 (Atg4b-006)
|
93768077-93775448 | retained_intron | ||
|
ENSMUST00000186124 (Atg4b-009)
|
93785583-93786580 | retained_intron | ||
|
ENSMUST00000186811 (Atg4b-011)
|
93784797-93787877 | nonsense_mediated_decay | ||
|
ENSMUST00000187824 (Atg4b-005)
|
93754988-93778288 | protein_coding | ||
|
ENSMUST00000189152 (Atg4b-004)
|
93755162-93768100 | processed_transcript | ||
|
ENSMUST00000189872 (Atg4b-007)
|
93784343-93785081 | retained_intron | ||
|
ENSMUSG00000101952 (RP24-263F3.1) predicted gene 10550 |
ENSMUST00000188846 (RP24-263F3.1-001)
|
93731104-93751072 | antisense | |
Expression Patterns
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