C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407347 RP11-528A10.1-001 ENSG00000218976 9606 - 6:18366736-18368644 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartMusclePlacentaTestisENST00000407347
Transcript ID Adipose Breast Colon Heart Muscle Placenta Testis
ENST00000407347 0.015±0.00 0.027±0.01 0.016±0.00 0.083±0.00 0.116±0.00 0.043±0.00 0.185±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041Y CIL_00041Y_0001 CGP 6:18223868-18468874
CIL_0008X6 CIL_0008X6_0001 VISTA 6:18236397-18838036
CIL_0007V4 CIL_0007V4_0001 VISTA 6:18312419-18914609
CIL_00086E CIL_00086E_0001 VISTA 6:18362559-18963807

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162099 Impdh1-002 protein_coding Mus_musculus 0 784
ENSMUST00000159124 Impdh1-003 protein_coding Mus_musculus 0 784
ENSMUST00000078155 Impdh1-001 protein_coding Mus_musculus 0 784
ENSMUST00000162739 Impdh1-004 protein_coding Mus_musculus 0 689
ENSMUST00000162215 Impdh1-007 protein_coding Mus_musculus 0 473
ENSMUST00000160878 Impdh1-005 protein_coding Mus_musculus 0 363
ENSMUST00000162242 Impdh1-010 protein_coding Mus_musculus 0 335
ENSMUST00000160749 Impdh1-006 protein_coding Mus_musculus 0 261
ENSMUST00000160613 Impdh1-009 retained_intron Mus_musculus 0 255

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