C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407436 RP11-360O19.5-001 ENSG00000217181 9606 - 6:10574749-10575227 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyOvaryPlacentaTestisENST00000407436
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Ovary Placenta Testis
ENST00000407436 0.089±0.00 0.255±0.00 0.120±0.00 0.146±0.00 0.140±0.05 0.176±0.00 0.050±0.00 0.044±0.00 0.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097A CIL_00097A_0001 VISTA 6:10093642-10694839
CIL_00086X CIL_00086X_0001 VISTA 6:10107199-10709812
CIL_000382 CIL_000382_0001 CGP 6:10393186-10629368

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 1e-38 163
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 3e-35 152

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