C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407929 SLC8A1-011 ENSG00000183023 9606 - 2:40114731-40430271 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000407929
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000407929 0.436±0.00 2.582±0.00 1.729±1.06 3.147±0.00 2.122±0.00 0.218±0.00 1.447±0.00 0.298±0.09 1.051±0.18 2.706±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066Z CIL_00066Z_0001 CGP 2:39736060-40611053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005432 IEA calcium:sodium antiporter activity
GO:0006816 IEA calcium ion transport
GO:0007154 IEA cell communication
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163123 Slc8a1-202 protein_coding Mus_musculus 0 2320
ENSMUST00000163680 Slc8a1-203 protein_coding Mus_musculus 0 2320
ENSMUST00000086538 Slc8a1-201 protein_coding Mus_musculus 0 2318

Loading