C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086538 Slc8a1-201 ENSMUSG00000054640 10090 - 17:81388691-81649607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartLiverMuscleTestisENSMUST00000086538
Transcript ID Adrenal Bladder Brain Heart Liver Muscle Testis
ENSMUST00000086538 0.009±0.00 1.277±0.00 1.315±0.00 14.297±4.60 0.071±0.00 0.983±0.21 0.672±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066Z CIL_00066Z_0002 CGP 17:81026327-81649607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001892 IMP embryonic placenta development
GO:0002026 IMP regulation of the force of heart contraction
GO:0003007 IGI heart morphogenesis
GO:0005432 IDA calcium:sodium antiporter activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006814 IDA sodium ion transport
GO:0006816 IDA calcium ion transport
GO:0006883 IEA cellular sodium ion homeostasis
GO:0007154 IEA cell communication
GO:0008092 IEA cytoskeletal protein binding
GO:0009791 IGI post-embryonic development
GO:0016020 IDA membrane
GO:0016021 TAS integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0030315 IDA T-tubule
GO:0034614 IEA cellular response to reactive oxygen species
GO:0035050 IMP embryonic heart tube development
GO:0042383 IDA sarcolemma
GO:0048747 IGI muscle fiber development
GO:0055013 IMP cardiac muscle cell development
GO:0060048 IGI cardiac muscle contraction
GO:0070509 IEA calcium ion import
GO:0071436 IEA sodium ion export
GO:0097369 IEA sodium ion import
GO:1901660 IEA calcium ion export

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077478 slc8a4a-201 protein_coding Danio_rerio 0 383
ENSDART00000135052 slc8a4a-001 protein_coding Danio_rerio 0 383
ENSDART00000063721 slc8a2b-201 protein_coding Danio_rerio 4e-21 108
ENSDART00000097701 slc8a2b-202 protein_coding Danio_rerio 4e-21 108
ENSDART00000144567 slc8a2b-001 protein_coding Danio_rerio 4e-21 108
ENST00000332839 SLC8A1-201 protein_coding Homo_sapiens 0 3707
ENST00000402441 SLC8A1-006 protein_coding Homo_sapiens 0 2143
ENST00000403092 SLC8A1-010 protein_coding Homo_sapiens 0 3707
ENST00000405269 SLC8A1-012 protein_coding Homo_sapiens 0 2143
ENST00000405901 SLC8A1-003 protein_coding Homo_sapiens 0 3631
ENST00000406391 SLC8A1-202 protein_coding Homo_sapiens 0 2143
ENST00000406785 SLC8A1-005 protein_coding Homo_sapiens 0 2143
ENST00000407929 SLC8A1-011 nonsense_mediated_decay Homo_sapiens 0 2318
ENST00000408028 SLC8A1-013 protein_coding Homo_sapiens 0 2143

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