C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat transmembrane neuronal 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409148 LRRTM1-007 ENSG00000162951 9606 - 2:80301880-80304274 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000409148
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000409148 0.145±0.00 0.237±0.00 1.495±0.00 0.338±0.00 0.568±0.00 0.062±0.04 0.173±0.00 0.038±0.01 0.166±0.00 0.081±0.00 0.490±0.00 0.186±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0001 CGP 2:79185231-80648861
CIL_0004I9 CIL_0004I9_0002 CGP 2:80288351-84460045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161677 Lrrtm1-002 protein_coding Mus_musculus 0 2902
ENSMUST00000159616 Lrrtm1-001 protein_coding Mus_musculus 0 2876
ENSMUST00000020400 Lrrtm1-003 nonsense_mediated_decay Mus_musculus 0 2796
ENSMUST00000161811 Lrrtm1-004 protein_coding Mus_musculus 0 939

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