C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, beta 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409583 ITGB6-002 ENSG00000115221 9606 - 2:160099671-160200304 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000409583
Transcript ID Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000409583 1.110±0.00 0.692±0.00 0.199±0.00 13.281±0.00 0.495±0.00 1.449±0.00 0.688±0.56 1.591±0.00 0.185±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TX CIL_0005TX_0001 CGP 2:159932006-160271888
CIL_0005TW CIL_0005TW_0001 CGP 2:160099666-160493794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059888 Itgb6-002 protein_coding Mus_musculus 0 2342
ENSMUST00000028348 Itgb6-001 protein_coding Mus_musculus 0 2270
ENSMUST00000154764 Itgb6-004 protein_coding Mus_musculus 0 2158
ENSMUST00000112517 Itgb6-003 protein_coding Mus_musculus 0 2158
ENSMUST00000133887 Itgb6-006 processed_transcript Mus_musculus 0 937
ENSMUST00000151035 Itgb6-007 processed_transcript Mus_musculus 0 732

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