C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small EDRK-rich factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409614 SERF2-009 ENSG00000140264 9606 + 15:43792839-43794046 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000409614
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000409614 377.122±0.00 231.726±0.00 382.463±0.00 476.739±0.00 179.720±0.00 728.009±0.00 380.782±0.00 113.294±0.00 904.547±0.00 1017.150±52.52 566.491±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_00067X CIL_00067X_0001 CGP 15:43746392-43777543

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134487 Fam221b-002 retained_intron Mus_musculus 0 752
ENSMUST00000139253 Serf2-001 protein_coding Mus_musculus 0 752
ENSMUST00000099475 Serf2-004 protein_coding Mus_musculus 0 634
ENSMUST00000110615 Serf2-003 protein_coding Mus_musculus 0 577
ENSMUST00000134412 Serf2-002 retained_intron Mus_musculus 0 577
ENSMUST00000102482 Gm12481-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000148575 Serf2-006 nonsense_mediated_decay Mus_musculus 2.00386e-43 180
ENSMUST00000154418 Serf2-005 nonsense_mediated_decay Mus_musculus 2.00386e-43 180

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