C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secernin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409673 SCRN3-006 ENSG00000144306 9606 + 2:174395745-174428417 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverOvaryPlacentaTestisENST00000409673
Transcript ID Adipose Bladder Brain Breast Heart Liver Ovary Placenta Testis
ENST00000409673 0.898±0.00 2.246±0.00 1.968±0.00 1.029±0.33 0.823±0.00 1.639±0.00 3.200±0.00 1.169±0.00 1.580±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_00096H CIL_00096H_0001 VISTA 2:174031315-174632386
CIL_0008GI CIL_0008GI_0001 VISTA 2:174038535-174640167
CIL_0008K2 CIL_0008K2_0001 VISTA 2:174042582-174643514
CIL_0003IH CIL_0003IH_0002 CGP 2:174348022-174429575
CIL_00063Z CIL_00063Z_0002 CGP 2:174395730-174487094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006508 IEA proteolysis
GO:0016805 IEA dipeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090811 Scrn3-001 protein_coding Mus_musculus 0 1162
ENSMUST00000123621 Scrn3-002 processed_transcript Mus_musculus 0 782
ENSMUST00000139926 Scrn3-006 processed_transcript Mus_musculus 0 547
ENSMUST00000112050 Scrn3-003 protein_coding Mus_musculus 0 507

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