Transcript Info |
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Description: | splicing factor 3b, subunit 1, 155kDa | |||||
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Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000409915 | SF3B1-005 | ENSG00000115524 | 9606 | - | 2:197416891-197435027 | protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
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Region ID | Sub-Region | Region Type | Position |
CIL_00042O | CIL_00042O_0002 | CGP | 2:196967017-197435091 |
CIL_0007X7 | CIL_0007X7_0001 | VISTA | 2:196975905-197591368 |
CIL_00042R | CIL_00042R_0002 | CGP | 2:197389784-197475308 |
Gene Ontology | ||
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GO ID | Evidence Type | GO Description |
GO:0000375 | NAS | RNA splicing, via transesterification reactions |
GO:0000398 | IC | mRNA splicing, via spliceosome |
GO:0005515 | IPI | protein binding |
GO:0005634 | IDA | nucleus |
GO:0005654 | TAS | nucleoplasm |
GO:0005681 | NAS | spliceosomal complex |
GO:0005689 | IDA | U12-type spliceosomal complex |
GO:0008380 | TAS | RNA splicing |
GO:0010467 | TAS | gene expression |
GO:0043231 | IDA | intracellular membrane-bounded organelle |
GO:0044822 | IDA | poly(A) RNA binding |
GO:0071013 | IDA | catalytic step 2 spliceosome |
Homologs | |||||
ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
ENSMUST00000191303 | Sf3b1-002 | nonsense_mediated_decay | Mus_musculus | 0 | 937 |
ENSMUST00000187500 | Sf3b1-003 | retained_intron | Mus_musculus | 0 | 710 |
ENSMUST00000027127 | Sf3b1-001 | protein_coding | Mus_musculus | 0 | 710 |
ENSMUST00000189051 | Sf3b1-007 | processed_transcript | Mus_musculus | 0 | 671 |
ENSMUST00000188419 | Sf3b1-008 | retained_intron | Mus_musculus | 0 | 337 |
ENSMUST00000188859 | Sf3b1-006 | retained_intron | Mus_musculus | 0 | 231 |