C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3b, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027127 Sf3b1-001 ENSMUSG00000025982 10090 - 1:54985169-55027481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027127 10.300±5.14 5.165±2.57 14.799±0.00 44.256±12.67 10.364±5.47 3.799±0.00 4.801±1.50 4.293±0.48 10.030±10.07 10.111±4.76 5.981±2.04 19.583±16.07 26.908±10.35 11.660±6.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_00042O CIL_00042O_0003 CGP 1:54645340-55027481
CIL_00042R CIL_00042R_0003 CGP 1:54985169-55072702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 ISO RNA splicing, via transesterification reactions
GO:0000398 ISO mRNA splicing, via spliceosome
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005681 ISO spliceosomal complex
GO:0005689 IEA U12-type spliceosomal complex
GO:0009952 IGI anterior/posterior pattern specification
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000078568 sf3b1-001 protein_coding Danio_rerio 0 2278
ENST00000335508 SF3B1-001 protein_coding Homo_sapiens 0 6360
ENST00000409915 SF3B1-005 protein_coding Homo_sapiens 0 710
ENST00000414174 SF3B1-003 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000414963 SF3B1-014 protein_coding Homo_sapiens 0 760
ENST00000424674 SF3B1-012 protein_coding Homo_sapiens 0 905
ENST00000462613 SF3B1-013 processed_transcript Homo_sapiens 1e-38 161
ENST00000468925 SF3B1-008 retained_intron Homo_sapiens 0 501
ENST00000470268 SF3B1-002 retained_intron Homo_sapiens 0 649
ENST00000479532 SF3B1-007 retained_intron Homo_sapiens 0 518
ENST00000482158 SF3B1-010 retained_intron Homo_sapiens 0 361
ENST00000487698 SF3B1-004 protein_coding Homo_sapiens 0 760
ENST00000496458 SF3B1-011 retained_intron Homo_sapiens 0 399

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