C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dyskeratosis congenita 1, dyskerin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412124 DKC1-011 ENSG00000130826 9606 + X:154767016-154776260 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungOvaryENST00000412124
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Ovary
ENST00000412124 3.213±0.00 2.036±0.00 5.659±0.00 5.214±0.00 0.800±0.00 3.114±0.00 2.051±0.00 8.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LH CIL_0003LH_0001 CGP X:154675249-154777689
CIL_0003LI CIL_0003LI_0001 CGP X:154762742-154821007

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153844 Dkc1-012 nonsense_mediated_decay Mus_musculus 0 732
ENSMUST00000033776 Dkc1-001 protein_coding Mus_musculus 0 475
ENSMUST00000151327 Dkc1-007 retained_intron Mus_musculus 0 431
ENSMUST00000122236 Gm13776-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000131155 Dkc1-011 protein_coding Mus_musculus 0 267
ENSMUST00000140609 Dkc1-006 nonsense_mediated_decay Mus_musculus 0 195
ENSMUST00000154936 Dkc1-008 processed_transcript Mus_musculus 0 193
ENSMUST00000137286 Dkc1-010 retained_intron Mus_musculus 4.2039e-45 185

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