C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 88A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412148 CCDC88A-006 ENSG00000115355 9606 - 2:55288178-55328425 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverMuscleOvaryPlacentaTestisENST00000412148
Transcript ID Colon Liver Muscle Ovary Placenta Testis
ENST00000412148 1.173±0.00 0.627±0.00 0.513±0.06 1.382±0.00 0.364±0.00 6.503±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z6 CIL_0000Z6_0002 CGP 2:55236595-55419921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0016477 IEA cell migration
GO:0032956 IEA regulation of actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040182 Ccdc88a-001 protein_coding Mus_musculus 0 3751
ENSMUST00000123561 Ccdc88a-002 protein_coding Mus_musculus 0 2976
ENSMUST00000155854 Ccdc88a-003 protein_coding Mus_musculus 0 1079
ENSMUST00000140194 Ccdc88a-004 protein_coding Mus_musculus 0 802
ENSMUST00000144450 Ccdc88a-006 processed_transcript Mus_musculus 0 243

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