C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 88A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115355 CCDC88A 9606 - 2:55287842-55419921 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263630 CCDC88A-001 55287842-55419856 protein_coding
  ENST00000336838 CCDC88A-002 55287842-55419613 protein_coding
  ENST00000412148 CCDC88A-006 55288178-55328425 protein_coding
  ENST00000413716 CCDC88A-201 55287847-55419921 protein_coding
  ENST00000426576 CCDC88A-005 55294173-55334345 protein_coding
  ENST00000430086 CCDC88A-009 55355712-55399777 protein_coding
  ENST00000436346 CCDC88A-202 55287847-55419921 protein_coding
  ENST00000444458 CCDC88A-003 55288088-55309207 protein_coding
  ENST00000456975 CCDC88A-008 55295797-55328396 protein_coding
  ENST00000468534 CCDC88A-010 55332415-55334350 retained_intron
  ENST00000471947 CCDC88A-004 55403387-55419856 processed_transcript
  ENST00000474059 CCDC88A-011 55309237-55317753 processed_transcript
  ENST00000476903 CCDC88A-012 55313829-55316051 processed_transcript
  ENST00000621814 CCDC88A-203 55334264-55419613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263630ENST00000336838ENST00000412148ENST00000413716ENST00000426576ENST00000436346ENST00000444458ENST00000621814
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263630 N/A N/A N/A 2.935±0.00 N/A N/A N/A N/A N/A 0.415±0.00 N/A 2.364±0.48 N/A N/A
ENST00000336838 0.320±0.00 N/A N/A 2.571±0.20 N/A 0.344±0.00 0.484±0.00 N/A N/A 1.141±0.78 N/A N/A N/A 1.298±0.00
ENST00000412148 N/A N/A N/A N/A N/A 1.173±0.00 N/A N/A 0.627±0.00 N/A 0.513±0.06 1.382±0.00 0.364±0.00 6.503±0.00
ENST00000413716 N/A N/A N/A N/A N/A N/A 0.330±0.00 N/A N/A N/A N/A 1.180±1.04 2.291±0.00 7.298±5.77
ENST00000426576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.751±0.00
ENST00000436346 1.267±0.00 0.444±0.00 N/A 7.863±0.00 0.361±0.00 0.926±0.05 0.895±0.07 N/A 0.669±0.11 1.359±0.83 N/A 1.376±0.00 0.286±0.00 2.866±0.00
ENST00000444458 0.795±0.00 1.450±0.00 N/A 7.079±1.74 1.247±0.00 1.013±0.00 0.715±0.00 2.126±0.75 0.627±0.00 1.408±0.00 0.296±0.00 2.011±0.21 0.823±0.23 3.222±0.00
ENST00000621814 N/A N/A 1.503±0.00 N/A 3.227±0.00 2.625±0.00 N/A 2.462±0.00 3.559±0.00 2.931±0.00 0.490±0.00 6.164±0.00 10.234±0.00 57.256±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z6 CIL_0000Z6_0002 CGP 2:55236595-55419921

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001932 ISS regulation of protein phosphorylation
GO:0003779 IEA:IDA actin binding
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006260 IEA DNA replication
GO:0006275 ISS regulation of DNA replication
GO:0008017 ISS microtubule binding
GO:0010975 ISS regulation of neuron projection development
GO:0016020 IDA:IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016477 IEA:IMP cell migration
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0031410 IDA cytoplasmic vesicle
GO:0031929 ISS TOR signaling
GO:0032148 ISS activation of protein kinase B activity
GO:0032956 IEA:IMP regulation of actin cytoskeleton organization
GO:0035091 IDA phosphatidylinositol binding
GO:0042127 ISS regulation of cell proliferation
GO:0042803 IPI protein homodimerization activity
GO:0043422 IPI protein kinase B binding
GO:0061024 IDA membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063681 coiled-coil domain containing 88A protein_coding Danio_rerio
ENSDARG00000078440 ccdc88aa coiled-coil domain containing 88Aa protein_coding Danio_rerio
ENSMUSG00000032740 Ccdc88a coiled coil domain containing 88A protein_coding Mus_musculus

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