C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled coil domain containing 88A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040182 Ccdc88a-001 ENSMUSG00000032740 10090 + 11:29373658-29510808 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040182
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040182 0.432±0.25 0.214±0.00 1.400±0.75 9.578±3.33 0.299±0.12 0.138±0.06 0.118±0.06 0.346±0.47 0.655±0.15 0.080±0.01 1.938±1.29 0.703±0.24 1.485±0.31

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001932 IDA regulation of protein phosphorylation
GO:0003779 ISS actin binding
GO:0005515 IPI protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0006260 IEA DNA replication
GO:0006275 IMP regulation of DNA replication
GO:0008017 IDA microtubule binding
GO:0010975 IDA regulation of neuron projection development
GO:0016020 ISS membrane
GO:0016477 ISS cell migration
GO:0030027 ISS lamellipodium
GO:0030032 ISS lamellipodium assembly
GO:0031410 ISS cytoplasmic vesicle
GO:0031929 IDA TOR signaling
GO:0032148 IDA activation of protein kinase B activity
GO:0032956 ISS regulation of actin cytoskeleton organization
GO:0035091 ISS phosphatidylinositol binding
GO:0042127 IMP regulation of cell proliferation
GO:0042803 ISS protein homodimerization activity
GO:0043422 IPI protein kinase B binding
GO:0061024 ISS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263630 CCDC88A-001 protein_coding Homo_sapiens 0 8506
ENST00000336838 CCDC88A-002 protein_coding Homo_sapiens 0 5821
ENST00000412148 CCDC88A-006 protein_coding Homo_sapiens 0 3751
ENST00000413716 CCDC88A-201 protein_coding Homo_sapiens 0 5821
ENST00000426576 CCDC88A-005 protein_coding Homo_sapiens 0 2579
ENST00000430086 CCDC88A-009 protein_coding Homo_sapiens 0 647
ENST00000436346 CCDC88A-202 protein_coding Homo_sapiens 0 5842
ENST00000444458 CCDC88A-003 protein_coding Homo_sapiens 0 2061
ENST00000456975 CCDC88A-008 protein_coding Homo_sapiens 0 2981
ENST00000468534 CCDC88A-010 retained_intron Homo_sapiens 0 486
ENST00000471947 CCDC88A-004 processed_transcript Homo_sapiens 0 326
ENST00000474059 CCDC88A-011 processed_transcript Homo_sapiens 0 464
ENST00000476903 CCDC88A-012 processed_transcript Homo_sapiens 2e-35 152
ENST00000621814 CCDC88A-203 protein_coding Homo_sapiens 0 3369

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