C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412758 NPM1P40-001 ENSG00000236523 9606 + 1:203255743-203256475 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastMuscleENST00000412758
Transcript ID Adipose Adrenal Brain Breast Muscle
ENST00000412758 0.102±0.00 0.076±0.00 0.058±0.00 0.072±0.00 0.027±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 608
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 608
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 608
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 499
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 6e-17 92
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 1e-18 97
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 3e-17 94

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