C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7289
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168993 Gm7289-001 ENSMUSG00000092056 10090 - 18:84658932-84659844 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverOvaryPlacentaTestisENSMUST00000168993
Transcript ID Bladder Brain Kidney Liver Ovary Placenta Testis
ENSMUST00000168993 0.049±0.01 0.035±0.00 0.200±0.00 0.064±0.04 0.275±0.26 0.148±0.15 0.098±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088P CIL_00088P_0002 VISTA 18:84072054-84673645
CIL_0008EA CIL_0008EA_0002 VISTA 18:84113592-84715865
CIL_0008CN CIL_0008CN_0002 VISTA 18:84163338-84766317
CIL_0008E7 CIL_0008E7_0002 VISTA 18:84241674-84843351
CIL_0008E6 CIL_0008E6_0002 VISTA 18:84247222-84848063

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296930 NPM1-001 protein_coding Homo_sapiens 0 708
ENST00000351986 NPM1-002 protein_coding Homo_sapiens 6e-36 156
ENST00000393820 NPM1-003 protein_coding Homo_sapiens 0 708
ENST00000399556 NPM1P46-001 processed_pseudogene Homo_sapiens 0 595
ENST00000403105 NPM1P37-001 processed_pseudogene Homo_sapiens 0 612
ENST00000412758 NPM1P40-001 processed_pseudogene Homo_sapiens 3e-17 94
ENST00000423757 NPM1P12-001 processed_pseudogene Homo_sapiens 0 547
ENST00000426339 NPM1P26-001 processed_pseudogene Homo_sapiens 0 601
ENST00000428039 NPM1P24-001 processed_pseudogene Homo_sapiens 0 538
ENST00000434232 NPM1P18-001 processed_pseudogene Homo_sapiens 0 606
ENST00000438918 NPM1P33-001 processed_pseudogene Homo_sapiens 0 630
ENST00000443470 NPM1P51-001 processed_pseudogene Homo_sapiens 0 601
ENST00000458237 NPM1P8-001 processed_pseudogene Homo_sapiens 0 636
ENST00000483112 NPM1P29-001 processed_pseudogene Homo_sapiens 0 542
ENST00000502784 NPM1P27-001 processed_pseudogene Homo_sapiens 0 671
ENST00000512920 NPM1P41-001 processed_pseudogene Homo_sapiens 0 302
ENST00000513394 NPM1P21-001 processed_pseudogene Homo_sapiens 0 616
ENST00000517671 NPM1-004 protein_coding Homo_sapiens 0 708
ENST00000519955 NPM1-011 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000521088 NPM1P6-001 processed_pseudogene Homo_sapiens 0 676
ENST00000532878 NPM1P50-001 processed_pseudogene Homo_sapiens 0 496
ENST00000533043 NPM1P35-001 processed_pseudogene Homo_sapiens 0 555

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