C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413233 TPM3P1-001 ENSG00000213050 9606 - 7:116972165-116972911 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000413233
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000413233 0.070±0.00 0.097±0.00 1.702±0.00 0.808±0.00 0.064±0.00 0.197±0.02 0.040±0.00 0.115±0.08 0.192±0.17 0.211±0.11 0.288±0.42 0.043±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QV CIL_0003QV_0001 CGP 7:116811070-117230103
CIL_0003QW CIL_0003QW_0001 CGP 7:116953238-117323289

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 865
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 865
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 743
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 743
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 619
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 619
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 497
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 496
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 496
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 375
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 346
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 340
ENSMUST00000116350 Tpm3-rs2-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 263
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 241
ENSMUST00000151798 Tpm3-012 retained_intron Mus_musculus 0 224
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 6.02558e-44 182

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