C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413334 AC011933.2-001 ENSG00000228007 9606 + 17:75338827-75339147 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMusclePlacentaTestisENST00000413334
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Placenta Testis
ENST00000413334 0.049±0.00 0.211±0.00 0.107±0.00 0.212±0.00 0.230±0.02 0.048±0.00 0.052±0.00 0.140±0.00 0.075±0.00 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_00021R CIL_00021R_0001 CGP 17:75272981-75405709
CIL_0007J0 CIL_0007J0_0001 CGP 17:75318076-75500090

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 416
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 412
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 411
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 409
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 405
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 0 209

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