C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413542 RP4-612C19.1-001 ENSG00000237003 9606 - 1:93190740-93191060 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverMuscleTestisENST00000413542
Transcript ID Bladder Brain Breast Colon Liver Muscle Testis
ENST00000413542 0.277±0.00 0.197±0.00 0.224±0.00 1.591±0.00 0.535±0.00 0.041±0.00 0.056±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZV CIL_0005ZV_0001 CGP 1:93149742-93278730
CIL_0005ZW CIL_0005ZW_0001 CGP 1:93179919-93369498

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 350
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 346
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 342
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 339
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 1.4013e-45 185

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