C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415093 SMYD2-201 ENSG00000143499 9606 + 1:214281233-214336834 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverLungMuscleOvaryPlacentaTestisENST00000415093
Transcript ID Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000415093 2.633±0.00 1.413±0.00 3.397±0.00 4.397±0.00 11.139±0.00 31.414±0.00 18.394±10.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Q CIL_00089Q_0001 VISTA 1:213807252-214408737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000993 ISS RNA polymerase II core binding
GO:0002039 IPI p53 binding
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0008285 ISS negative regulation of cell proliferation
GO:0016279 IDA protein-lysine N-methyltransferase activity
GO:0018026 IDA peptidyl-lysine monomethylation
GO:0018027 ISS peptidyl-lysine dimethylation
GO:0043516 IMP regulation of DNA damage response, signal transduction by p53 class mediator
GO:0046872 IEA metal ion binding
GO:0046975 ISS histone methyltransferase activity (H3-K36 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027897 Smyd2-001 protein_coding Mus_musculus 0 900
ENSMUST00000144452 Smyd2-002 retained_intron Mus_musculus 0 507
ENSMUST00000130804 Smyd2-003 processed_transcript Mus_musculus 0 252

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