C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial tRNA translation optimization 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415228 MTO1-005 ENSG00000135297 9606 + 6:73461765-73501096 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000415228
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000415228 2.093±0.00 1.196±0.24 1.207±0.00 1.319±0.00 3.221±0.00 1.726±0.00 1.398±0.00 2.476±0.23 1.327±0.02 7.586±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PO CIL_0006PO_0001 CGP 6:73461578-73523797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008033 IEA tRNA processing
GO:0016491 IEA oxidoreductase activity
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148238 Mto1-007 nonsense_mediated_decay Mus_musculus 0 1722
ENSMUST00000034896 Mto1-001 protein_coding Mus_musculus 0 1219
ENSMUST00000150850 Mto1-002 retained_intron Mus_musculus 0 414

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