C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108539 Rps5-002 ENSMUSG00000012848 10090 + 7:12922290-12926685 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000007 CIL_000007_0002 CGP 7:12922290-12931072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0006450 IEA regulation of translational fidelity
GO:0016020 IEA membrane
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0030529 ISO ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000196551 RPS5-201 protein_coding Homo_sapiens 0 857
ENST00000402406 RP11-307I14.2-001 processed_pseudogene Homo_sapiens 0 553
ENST00000414617 RPS5P3-001 processed_pseudogene Homo_sapiens 0 638
ENST00000415238 RPS5P2-001 processed_pseudogene Homo_sapiens 0 492
ENST00000430252 DSE-005 protein_coding Homo_sapiens 0 569
ENST00000435100 RP3-486I3.4-001 processed_pseudogene Homo_sapiens 0 723
ENST00000437297 RP11-459A10.1-001 processed_pseudogene Homo_sapiens 0 649
ENST00000472088 RP11-941H19.2-001 processed_pseudogene Homo_sapiens 0 619
ENST00000570744 RPS5P3-001 processed_pseudogene Homo_sapiens 0 638
ENST00000596046 RPS5-002 protein_coding Homo_sapiens 0 857
ENST00000596314 RPS5-004 protein_coding Homo_sapiens 0 804
ENST00000598098 RPS5-005 protein_coding Homo_sapiens 0 440
ENST00000598495 RPS5-006 protein_coding Homo_sapiens 0 721
ENST00000598807 RPS5-007 retained_intron Homo_sapiens 0 590
ENST00000599232 RPS5-003 retained_intron Homo_sapiens 8.00001e-41 172
ENST00000601521 RPS5-001 protein_coding Homo_sapiens 0 857

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