C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137329 Rps5-004 ENSMUSG00000012848 10090 + 7:12922437-12926494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryENSMUST00000137329
Transcript ID Adrenal Breast Colon Liver Ovary
ENSMUST00000137329 284.183±43.20 275.179±134.91 199.189±35.15 86.953±17.17 520.278±43.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000007 CIL_000007_0002 CGP 7:12922290-12931072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0030529 ISO ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000196551 RPS5-201 protein_coding Homo_sapiens 0 730
ENST00000402406 RP11-307I14.2-001 processed_pseudogene Homo_sapiens 0 494
ENST00000414617 RPS5P3-001 processed_pseudogene Homo_sapiens 0 566
ENST00000415238 RPS5P2-001 processed_pseudogene Homo_sapiens 0 409
ENST00000430252 DSE-005 protein_coding Homo_sapiens 0 488
ENST00000435100 RP3-486I3.4-001 processed_pseudogene Homo_sapiens 0 671
ENST00000437297 RP11-459A10.1-001 processed_pseudogene Homo_sapiens 0 580
ENST00000472088 RP11-941H19.2-001 processed_pseudogene Homo_sapiens 0 542
ENST00000570744 RPS5P3-001 processed_pseudogene Homo_sapiens 0 566
ENST00000596046 RPS5-002 protein_coding Homo_sapiens 0 730
ENST00000596314 RPS5-004 protein_coding Homo_sapiens 0 730
ENST00000598098 RPS5-005 protein_coding Homo_sapiens 0 315
ENST00000598495 RPS5-006 protein_coding Homo_sapiens 0 595
ENST00000598807 RPS5-007 retained_intron Homo_sapiens 0 588
ENST00000599232 RPS5-003 retained_intron Homo_sapiens 8.00001e-41 172
ENST00000601521 RPS5-001 protein_coding Homo_sapiens 0 730

Loading