C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415332 SYNGR1-003 ENSG00000100321 9606 + 22:39349987-39377911 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000415332
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000415332 2.569±0.00 4.544±0.00 2.270±0.00 3.734±3.14 5.047±4.13 0.855±0.00 3.799±0.00 3.232±2.47 11.366±10.13 7.766±1.88 8.795±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CB CIL_0000CB_0001 CGP 22:39312882-39385588
CIL_0000A3 CIL_0000A3_0001 CGP 22:39349925-39437060

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009727 Syngr1-001 protein_coding Mus_musculus 0 477
ENSMUST00000009728 Syngr1-002 protein_coding Mus_musculus 0 477
ENSMUST00000143928 Syngr1-003 protein_coding Mus_musculus 0 285

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