C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009727 Syngr1-001 ENSMUSG00000022415 10090 + 15:80091344-80119501 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009727 0.596±0.10 6.537±0.84 4.889±0.21 27.567±21.80 1.434±0.22 2.360±0.22 2.434±0.20 6.181±0.52 0.271±0.20 2.115±0.12 1.490±0.10 1.980±0.65 1.812±0.84 0.368±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0002 CGP 15:79995900-80091868
CIL_0000CB CIL_0000CB_0002 CGP 15:80077794-80119501
CIL_0000A3 CIL_0000A3_0002 CGP 15:80091334-80161701

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006605 ISO protein targeting
GO:0008021 ISO synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030672 IEA synaptic vesicle membrane
GO:0048169 IMP regulation of long-term neuronal synaptic plasticity
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216155 SYNGR1-006 protein_coding Homo_sapiens 0 523
ENST00000318801 SYNGR1-002 protein_coding Homo_sapiens 0 736
ENST00000328933 SYNGR1-001 protein_coding Homo_sapiens 0 979
ENST00000381535 SYNGR1-005 protein_coding Homo_sapiens 0 499
ENST00000406293 SYNGR1-007 protein_coding Homo_sapiens 0 688
ENST00000415332 SYNGR1-003 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000489206 SYNGR1-004 retained_intron Homo_sapiens 0 455

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