C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptogyrin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100321 SYNGR1 9606 + 22:39349925-39385588 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216155 SYNGR1-006 39349949-39376033 protein_coding
  ENST00000318801 SYNGR1-002 39349925-39378389 protein_coding
  ENST00000328933 SYNGR1-001 39349996-39385588 protein_coding
  ENST00000381535 SYNGR1-005 39364170-39378381 protein_coding
  ENST00000406293 SYNGR1-007 39349991-39377075 protein_coding
  ENST00000415332 SYNGR1-003 39349987-39377911 nonsense_mediated_decay
  ENST00000489206 SYNGR1-004 39350006-39376210 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216155ENST00000318801ENST00000328933ENST00000381535ENST00000406293ENST00000415332ENST00000489206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216155 N/A N/A N/A N/A N/A N/A N/A 1.321±0.00 N/A N/A N/A 1.560±0.00 N/A N/A
ENST00000318801 N/A 4.027±0.00 N/A N/A 0.903±0.51 N/A 3.324±0.00 6.035±0.00 0.733±0.43 2.096±0.00 1.185±0.00 13.086±6.24 2.515±0.35 5.675±0.00
ENST00000328933 1.132±0.00 2.253±0.00 0.665±0.00 40.297±19.67 1.116±0.59 2.653±2.26 1.230±1.00 1.944±1.93 0.557±0.21 1.271±0.74 0.638±0.21 8.963±9.73 0.978±0.28 7.720±1.97
ENST00000381535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.916±0.00 N/A N/A N/A
ENST00000406293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.685±0.00 8.832±4.54 17.074±0.00
ENST00000415332 2.569±0.00 4.544±0.00 N/A N/A 2.270±0.00 3.734±3.14 5.047±4.13 N/A 0.855±0.00 3.799±0.00 3.232±2.47 11.366±10.13 7.766±1.88 8.795±0.30
ENST00000489206 N/A N/A 0.412±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CB CIL_0000CB_0001 CGP 22:39312882-39385588
CIL_0000A3 CIL_0000A3_0001 CGP 22:39349925-39437060

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006605 IEA protein targeting
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030672 IEA synaptic vesicle membrane
GO:0048169 ISS regulation of long-term neuronal synaptic plasticity
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002564 syngr1a synaptogyrin 1a protein_coding Danio_rerio
ENSDARG00000023209 syngr1b synaptogyrin 1b protein_coding Danio_rerio
ENSMUSG00000022415 Syngr1 synaptogyrin 1 protein_coding Mus_musculus

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