C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009728 Syngr1-002 ENSMUSG00000022415 10090 + 15:80091334-80113441 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009728
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009728 12.691±0.75 16.003±6.31 26.184±3.13 15.694±6.86 2.269±0.40 79.434±9.50 23.117±1.88 4.684±4.93 10.343±3.06 31.300±2.71 10.558±3.75 41.327±14.59 1.983±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0002 CGP 15:79995900-80091868
CIL_0000CB CIL_0000CB_0002 CGP 15:80077794-80119501
CIL_0000A3 CIL_0000A3_0002 CGP 15:80091334-80161701

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006605 ISO protein targeting
GO:0008021 ISO synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0048169 IMP regulation of long-term neuronal synaptic plasticity
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216155 SYNGR1-006 protein_coding Homo_sapiens 0 542
ENST00000318801 SYNGR1-002 protein_coding Homo_sapiens 0 870
ENST00000328933 SYNGR1-001 protein_coding Homo_sapiens 0 682
ENST00000381535 SYNGR1-005 protein_coding Homo_sapiens 0 616
ENST00000406293 SYNGR1-007 protein_coding Homo_sapiens 0 691
ENST00000415332 SYNGR1-003 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000489206 SYNGR1-004 retained_intron Homo_sapiens 0 455

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