C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSEN2 tRNA splicing endonuclease subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415684 TSEN2-006 ENSG00000154743 9606 + 3:12489780-12533659 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLungOvaryPlacentaTestisENST00000415684
Transcript ID Adrenal Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000415684 1.252±0.00 0.610±0.00 0.823±0.00 1.500±0.00 0.731±0.43 0.245±0.13 1.350±0.10 0.733±0.04 0.942±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004K9 CIL_0004K9_0001 CGP 3:12287368-12539623
CIL_0005SH CIL_0005SH_0001 CGP 3:12484432-12561059

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0000214 IEA tRNA-intron endonuclease complex
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0006388 IDA:IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0016829 IEA lyase activity
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040234 Tsen2-001 protein_coding Mus_musculus 0 481
ENSMUST00000143520 Tsen2-005 processed_transcript Mus_musculus 0 289

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