C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S7 pseudogene 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415804 RPS7P15-001 ENSG00000237170 9606 + 4:4507078-4507777 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000415804
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000415804 0.060±0.00 0.151±0.00 0.030±0.00 0.136±0.11 0.027±0.00 0.216±0.19 0.264±0.00 0.052±0.00 0.069±0.00 0.088±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZA CIL_0008ZA_0001 VISTA 4:4157066-4757929
CIL_00096M CIL_00096M_0001 VISTA 4:4215001-4816750
CIL_0008QQ CIL_0008QQ_0001 VISTA 4:4221140-4822323
CIL_00096B CIL_00096B_0001 VISTA 4:4365944-4967466
CIL_00096C CIL_00096C_0001 VISTA 4:4434704-5035550
CIL_000969 CIL_000969_0001 VISTA 4:4454510-5056279

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178147 Gm6472-002 processed_transcript Mus_musculus 0 569
ENSMUST00000074267 Rps7-201 protein_coding Mus_musculus 0 569
ENSMUST00000187973 Gm6472-001 transcribed_processed_pseudogene Mus_musculus 0 566
ENSMUST00000104916 Gm9493-201 protein_coding Mus_musculus 0 534
ENSMUST00000190473 RP23-300D5.1-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000119317 Gm8019-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000116438 Gm7091-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000178086 Gm4761-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000120919 Gm12900-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000181924 Gm21960-001 processed_pseudogene Mus_musculus 0 235

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