C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00096C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm428 VISTA 9606 4:4434704-5035550
GeneTranscriptPositionBiotype
ENSG00000163132 (MSX1)
msh homeobox 1 		ENST00000382723 (MSX1-001) 4859666-4863936 protein_coding
ENST00000468421 (MSX1-002) 4862428-4863028 processed_transcript
ENSG00000168818 (STX18)
syntaxin 18 		ENST00000306200 (STX18-001) 4418968-4542028 protein_coding
ENST00000502267 (STX18-008) 4420095-4425649 retained_intron
ENST00000503692 (STX18-003) 4418968-4426613 retained_intron
ENST00000503861 (STX18-006) 4419943-4461937 nonsense_mediated_decay
ENST00000505286 (STX18-002) 4415742-4542010 protein_coding
ENST00000507908 (STX18-004) 4425173-4542346 protein_coding
ENST00000510296 (STX18-010) 4420221-4423688 retained_intron
ENST00000512195 (STX18-007) 4425161-4461954 protein_coding
ENST00000512780 (STX18-005) 4438439-4542031 retained_intron
ENST00000515687 (STX18-009) 4419334-4423823 retained_intron
ENSG00000170891 (CYTL1)
cytokine-like 1 		ENST00000307746 (CYTL1-001) 5014586-5019472 protein_coding
ENST00000506508 (CYTL1-003) 5014827-5019437 protein_coding
ENST00000509419 (CYTL1-004) 5015144-5019441 protein_coding
ENSG00000200761 (RN7SKP113)
RNA, 7SK small nuclear pseudogene 113 		ENST00000363891 (RN7SKP113-201) 4920770-4921064 misc_RNA
ENSG00000237170 (RPS7P15)
ribosomal protein S7 pseudogene 15 		ENST00000415804 (RPS7P15-001) 4507078-4507777 processed_pseudogene
ENSG00000247708 (STX18-AS1)
STX18 antisense RNA 1 (head to head) 		ENST00000499430 (STX18-AS1-004) 4542131-4544907 antisense
ENST00000502693 (STX18-AS1-003) 4542240-4637904 antisense
ENST00000507244 (STX18-AS1-001) 4542143-4560559 antisense
ENST00000512438 (STX18-AS1-002) 4542199-4591175 antisense
ENST00000514763 (STX18-AS1-005) 4542418-4545060 antisense
ENST00000608184 (STX18-AS1-007) 4649424-4708600 antisense
ENST00000610009 (STX18-AS1-006) 4542204-4710938 antisense
ENSG00000248221 (STX18-IT1)
STX18 intronic transcript 1 (non-protein coding) 		ENST00000515487 (STX18-IT1-001) 4476121-4481700 sense_intronic
ENSG00000251587 (LDHAP1)
lactate dehydrogenase A pseudogene 1 		ENST00000509421 (LDHAP1-001) 4894182-4895173 processed_pseudogene
ENSG00000273396 (LINC01396)
long intergenic non-protein coding RNA 1396 		ENST00000609099 (LINC01396-001) 4844437-4850827 lincRNA
ENSG00000280310 (RP11-326I19.2)
 ENST00000624794 (RP11-326I19.2-001) 4820405-4821452 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00096C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm428 VISTA 10090 5:37617742-38218594
GeneTranscriptPositionBiotype
ENSMUSG00000029123 (Stk32b)
serine/threonine kinase 32B 		ENSMUST00000094836 (Stk32b-201) 37446828-37717153 protein_coding
ENSMUSG00000029125 (Stx18)
syntaxin 18 		ENSMUST00000031008 (Stx18-005) 38039233-38136817 protein_coding
ENSMUST00000042146 (Stx18-004) 38039251-38136819 protein_coding
ENSMUST00000114126 (Stx18-001) 38038742-38137765 protein_coding
ENSMUST00000141286 (Stx18-007) 38134395-38136435 retained_intron
ENSMUST00000146864 (Stx18-002) 38076557-38128073 processed_transcript
ENSMUST00000147667 (Stx18-006) 38120909-38128099 retained_intron
ENSMUST00000154929 (Stx18-003) 38039283-38136272 protein_coding
ENSMUSG00000029126 (Nsg1)
neuron specific gene family member 1 		ENSMUST00000031009 (Nsg1-201) 38137193-38159467 protein_coding
ENSMUSG00000029127 (Zbtb49)
zinc finger and BTB domain containing 49 		ENSMUST00000094833 (Zbtb49-001) 38200079-38220457 protein_coding
ENSMUST00000114113 (Zbtb49-007) 38212037-38220454 protein_coding
ENSMUST00000123106 (Zbtb49-009) 38203805-38220431 processed_transcript
ENSMUST00000124939 (Zbtb49-005) 38189735-38206183 processed_transcript
ENSMUST00000126267 (Zbtb49-002) 38200246-38220413 nonsense_mediated_decay
ENSMUST00000129161 (Zbtb49-010) 38203749-38213552 processed_transcript
ENSMUST00000136475 (Zbtb49-004) 38200634-38220425 nonsense_mediated_decay
ENSMUST00000137577 (Zbtb49-008) 38215970-38220424 retained_intron
ENSMUST00000138820 (Zbtb49-006) 38200634-38220427 nonsense_mediated_decay
ENSMUST00000143436 (Zbtb49-003) 38200249-38220364 nonsense_mediated_decay
ENSMUST00000146859 (Zbtb49-011) 38203248-38203797 protein_coding
ENSMUSG00000048450 (Msx1)
msh homeobox 1 		ENSMUST00000063116 (Msx1-001) 37820485-37824583 protein_coding
ENSMUST00000183013 (Msx1-003) 37822703-37824582 retained_intron
ENSMUSG00000062329 (Cytl1)
cytokine-like 1 		ENSMUST00000073554 (Cytl1-201) 37735519-37739820 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00096C_0001ENSG00000163132ENST00000382723ENSG00000168818ENST00000306200ENST00000503692ENST00000503861ENST00000507908ENST00000512195ENST00000512780ENST00000515687ENSG00000170891ENST00000307746ENST00000506508ENST00000509419ENSG00000200761ENST00000363891ENSG00000237170ENST00000415804ENSG00000247708ENST00000499430ENSG00000248221ENST00000515487ENSG00000251587ENST00000509421ENSG00000273396ENST00000609099ENSG00000280310ENST00000624794CIL_00096C_0002ENSMUSG00000029123ENSMUST00000094836ENSMUSG00000029125ENSMUST00000031008ENSMUST00000042146ENSMUST00000114126ENSMUST00000146864ENSMUST00000154929ENSMUSG00000029126ENSMUST00000031009ENSMUSG00000029127ENSMUST00000094833ENSMUST00000114113ENSMUST00000124939ENSMUST00000126267ENSMUST00000136475ENSMUST00000138820ENSMUST00000143436ENSMUSG00000048450ENSMUST00000063116ENSMUST00000183013ENSMUSG00000062329ENSMUST00000073554
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163132 ENST00000382723 5.748±0.00 1.872±0.00 0.142±0.00 1.378±1.06 6.893±0.00 2.151±2.13 1.089±0.83 1.094±0.00 0.512±0.31 3.141±2.85 0.880±0.00 2.032±1.29 5.397±1.30 1.217±0.80
ENST00000468421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168818 ENST00000306200 7.338±0.00 6.122±0.00 0.974±0.00 9.750±4.75 4.707±2.51 2.181±0.45 2.638±2.12 12.427±0.00 1.907±0.01 4.040±0.00 3.298±0.00 8.353±5.56 9.893±1.47 20.372±1.44
ENST00000502267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503692 N/A 1.538±0.00 0.770±0.00 N/A 0.668±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503861 N/A N/A N/A N/A 7.142±0.00 N/A N/A 14.346±0.00 N/A N/A 2.842±1.99 N/A N/A 17.799±0.00
ENST00000505286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.411±0.00 20.690±0.00 71.306±0.00
ENST00000510296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512195 N/A N/A N/A N/A 3.326±0.00 N/A N/A 1.094±0.00 N/A 3.111±0.00 N/A N/A N/A N/A
ENST00000512780 N/A N/A N/A N/A N/A 4.572±0.00 1.391±0.00 1.847±0.00 N/A 3.891±0.00 0.556±0.00 4.866±0.00 N/A N/A
ENST00000515687 N/A 3.751±0.00 2.082±0.00 N/A N/A N/A N/A 1.155±0.00 2.391±0.00 N/A N/A N/A N/A N/A
ENSG00000170891 ENST00000307746 0.446±0.00 4.296±0.00 N/A 1.077±0.91 0.570±0.32 1.035±0.58 0.072±0.04 0.221±0.00 N/A 10.659±8.22 0.090±0.00 0.835±0.50 17.249±7.67 0.844±0.38
ENST00000506508 N/A 4.500±0.00 N/A 0.626±0.00 N/A 1.003±0.00 N/A N/A N/A 8.118±0.00 0.279±0.00 0.286±0.00 N/A 0.889±0.00
ENST00000509419 N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A N/A 0.204±0.00 N/A N/A
ENSG00000200761 ENST00000363891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.113±0.00
ENSG00000237170 ENST00000415804 N/A 0.060±0.00 N/A 0.151±0.00 0.030±0.00 0.136±0.11 0.027±0.00 N/A 0.216±0.19 0.264±0.00 0.052±0.00 0.069±0.00 N/A 0.088±0.01
ENSG00000247708 ENST00000499430 N/A N/A N/A N/A N/A 5.263±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248221 ENST00000515487 N/A 0.142±0.00 0.630±0.00 0.060±0.00 0.173±0.00 N/A 0.053±0.00 N/A 0.494±0.00 1.174±0.00 N/A 0.083±0.00 N/A 0.047±0.00
ENSG00000251587 ENST00000509421 N/A 0.012±0.00 N/A N/A 0.012±0.00 N/A N/A 0.024±0.00 0.097±0.00 N/A 0.011±0.00 N/A N/A 0.018±0.01
ENSG00000273396 ENST00000609099 0.058±0.00 N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A 0.097±0.07
ENSG00000280310 ENST00000624794 0.030±0.00 0.031±0.00 0.185±0.00 0.467±0.00 0.129±0.00 0.074±0.00 0.087±0.00 0.063±0.00 0.065±0.00 0.127±0.00 N/A 0.210±0.12 0.121±0.05 0.156±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029123 ENSMUST00000094836 0.047±0.03 0.174±0.07 0.037±0.00 13.512±9.66 0.342±0.09 0.013±0.00 0.332±0.04 4.077±0.68 0.479±0.53 0.027±0.01 0.014±0.00 0.239±0.11 0.083±0.08 0.636±0.45
ENSMUSG00000029125 ENSMUST00000031008 4.148±0.39 N/A 4.453±0.49 N/A 4.390±0.00 N/A 1.669±0.07 N/A 2.730±0.58 N/A 2.851±0.59 8.761±0.32 9.475±3.64 N/A
ENSMUST00000042146 15.106±2.58 12.786±1.27 7.622±1.02 N/A 11.791±2.11 9.923±2.12 5.724±0.92 8.288±3.50 7.590±2.40 11.741±0.51 2.822±0.86 13.860±4.42 7.370±2.19 12.872±5.05
ENSMUST00000114126 1.754±0.00 N/A N/A N/A N/A 1.309±0.00 N/A 1.473±0.05 0.719±0.12 N/A N/A 2.309±0.19 N/A 2.840±0.00
ENSMUST00000141286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.840±0.27 16.385±6.70 34.219±13.97 27.227±0.00
ENSMUST00000147667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.051±0.00 22.739±3.49 49.079±0.00
ENSMUSG00000029126 ENSMUST00000031009 8.964±3.32 15.397±0.93 7.590±0.42 158.478±76.98 3.934±0.67 5.758±0.58 2.998±0.90 4.483±0.45 1.676±0.37 24.319±1.82 0.796±0.14 10.918±2.39 2.802±0.00 13.207±5.59
ENSMUSG00000029127 ENSMUST00000094833 0.818±0.26 1.711±0.19 1.285±0.62 N/A 1.268±0.28 0.982±0.27 0.260±0.00 0.474±0.13 0.563±0.20 1.201±0.00 0.209±0.04 2.932±1.23 1.080±0.41 2.594±0.90
ENSMUST00000114113 N/A N/A N/A 0.712±0.00 0.224±0.00 1.195±0.00 0.293±0.08 N/A 0.273±0.08 1.161±0.01 0.081±0.02 1.502±0.41 0.543±0.14 N/A
ENSMUST00000123106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124939 N/A 1.013±0.00 N/A N/A 0.181±0.00 N/A N/A 0.537±0.06 0.293±0.08 N/A 0.144±0.02 N/A N/A 1.427±0.18
ENSMUST00000126267 0.417±0.00 N/A 0.925±0.00 1.776±0.38 0.915±0.23 1.994±1.10 0.227±0.03 0.545±0.04 0.629±0.43 1.244±0.20 0.312±0.15 2.247±0.79 0.584±0.20 2.340±0.03
ENSMUST00000129161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136475 1.395±0.37 2.600±0.60 N/A N/A 2.558±0.84 2.424±0.32 0.642±0.06 1.053±0.40 0.662±0.33 2.550±0.48 0.294±0.08 2.742±0.70 0.988±0.50 2.143±0.39
ENSMUST00000137577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138820 N/A 2.056±0.54 N/A N/A 1.135±0.00 N/A N/A N/A 0.474±0.19 N/A 0.293±0.00 N/A N/A N/A
ENSMUST00000143436 N/A N/A N/A 3.350±1.42 N/A N/A N/A N/A 0.710±0.25 N/A 0.434±0.08 2.087±0.00 1.758±0.69 3.185±0.31
ENSMUST00000146859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048450 ENSMUST00000063116 21.255±19.40 1.966±0.26 1.661±0.20 3.930±1.42 6.951±0.68 0.283±0.08 1.591±0.25 0.487±0.07 0.071±0.05 2.490±0.19 0.968±0.34 10.774±5.02 0.676±0.49 0.051±0.04
ENSMUST00000183013 9.033±0.17 N/A N/A N/A 0.402±0.00 0.107±0.00 N/A N/A 0.008±0.00 N/A 0.107±0.00 N/A 0.146±0.01 0.022±0.00
ENSMUSG00000062329 ENSMUST00000073554 8.158±1.46 2.602±0.90 8.565±1.28 0.352±0.20 7.133±1.56 7.107±1.12 24.025±4.38 2.061±0.56 0.061±0.03 19.727±5.32 2.852±0.59 2.067±0.73 0.367±0.26 1.291±0.48

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