C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial tRNA translation optimization 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415954 MTO1-012 ENSG00000135297 9606 + 6:73461578-73501096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLungMuscleOvaryENST00000415954
Transcript ID Adipose Bladder Brain Breast Heart Kidney Lung Muscle Ovary
ENST00000415954 0.971±0.00 2.711±0.00 1.735±0.05 1.146±0.00 0.507±0.00 1.702±0.06 1.604±0.00 0.581±0.00 1.820±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PO CIL_0006PO_0001 CGP 6:73461578-73523797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002098 IEA tRNA wobble uridine modification
GO:0005739 IEA mitochondrion
GO:0008033 IEA tRNA processing
GO:0044822 IDA poly(A) RNA binding
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process
GO:0070899 IEA mitochondrial tRNA wobble uridine modification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034896 Mto1-001 protein_coding Mus_musculus 0 1321
ENSMUST00000148238 Mto1-007 nonsense_mediated_decay Mus_musculus 0 713
ENSMUST00000150850 Mto1-002 retained_intron Mus_musculus 0 414

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