C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: leucine rich repeat transmembrane neuronal 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416268 LRRTM1-004 ENSG00000162951 9606 - 2:80303151-80304595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverOvaryTestisENST00000416268
Transcript ID Breast Liver Ovary Testis
ENST00000416268 0.998±0.00 0.258±0.00 0.188±0.00 0.534±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0001 CGP 2:79185231-80648861
CIL_0004I9 CIL_0004I9_0002 CGP 2:80288351-84460045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161677 Lrrtm1-002 protein_coding Mus_musculus 0 1114
ENSMUST00000159616 Lrrtm1-001 protein_coding Mus_musculus 0 1114
ENSMUST00000020400 Lrrtm1-003 nonsense_mediated_decay Mus_musculus 0 1114
ENSMUST00000161811 Lrrtm1-004 protein_coding Mus_musculus 0 939

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