C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416591 CAPN10-004 ENSG00000142330 9606 + 2:240586871-240599084 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; MusclePlacentaTestisENST00000416591
Transcript ID Muscle Placenta Testis
ENST00000416591 0.245±0.00 0.585±0.18 1.738±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AE CIL_0009AE_0001 VISTA 2:240068562-240673577
CIL_0003NU CIL_0003NU_0001 CGP 2:240565804-240617705
CIL_0003NA CIL_0003NA_0001 CGP 2:240586716-240631259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 ISS SNARE binding
GO:0004198 IMP:IEA calcium-dependent cysteine-type endopeptidase activity
GO:0005622 IEA intracellular
GO:0005623 IDA cell
GO:0005739 IDA mitochondrion
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0006508 IMP:IEA proteolysis
GO:0006921 IC cellular component disassembly involved in execution phase of apoptosis
GO:0008092 ISS cytoskeletal protein binding
GO:0031532 ISS actin cytoskeleton reorganization
GO:0032024 IMP positive regulation of insulin secretion
GO:0032388 ISS positive regulation of intracellular transport
GO:0032869 IMP cellular response to insulin stimulus
GO:0046326 IMP positive regulation of glucose import
GO:0097050 IDA type B pancreatic cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152983 Capn10-003 nonsense_mediated_decay Mus_musculus 0 1197
ENSMUST00000027488 Capn10-001 protein_coding Mus_musculus 0 1197

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