C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056416 Rbfox1-201 ENSMUSG00000008658 10090 + 16:7069835-7412479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056416
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056416 0.016±0.00 0.102±0.01 16.709±7.12 1.061±0.76 0.043±0.01 4.385±1.21 0.238±0.06 0.022±0.01 0.608±0.21 43.636±2.26 0.080±0.03 0.010±0.00 0.037±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EQ CIL_0000EQ_0002 CGP 16:5244152-7412479
CIL_00090F CIL_00090F_0002 VISTA 16:6806398-7407046
CIL_0000EP CIL_0000EP_0002 CGP 16:6809222-8425136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005802 IEA trans-Golgi network
GO:0006397 IEA mRNA processing
GO:0008022 IEA protein C-terminus binding
GO:0008380 IEA RNA splicing
GO:0043484 IEA regulation of RNA splicing
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122037 rbfox1-001 protein_coding Danio_rerio 0 348
ENSDART00000150888 rbfox1-005 protein_coding Danio_rerio 0 270
ENST00000262829 RBFOX2-002 protein_coding Homo_sapiens 0 193
ENST00000311745 RBFOX1-001 protein_coding Homo_sapiens 0 1860
ENST00000340209 RBFOX1-201 protein_coding Homo_sapiens 0 1759
ENST00000355637 RBFOX1-002 protein_coding Homo_sapiens 0 1519
ENST00000359369 RBFOX2-006 protein_coding Homo_sapiens 0 311
ENST00000397303 RBFOX2-009 protein_coding Homo_sapiens 0 315
ENST00000405409 RBFOX2-001 protein_coding Homo_sapiens 0 315
ENST00000414461 RBFOX2-010 protein_coding Homo_sapiens 0 311
ENST00000416721 RBFOX2-008 protein_coding Homo_sapiens 0 311
ENST00000422070 RBFOX1-009 protein_coding Homo_sapiens 0 1332
ENST00000436368 RBFOX1-011 protein_coding Homo_sapiens 0 1635
ENST00000438146 RBFOX2-005 protein_coding Homo_sapiens 0 315
ENST00000449924 RBFOX2-003 protein_coding Homo_sapiens 0 311
ENST00000473487 RBFOX2-014 protein_coding Homo_sapiens 0 311
ENST00000495377 RBFOX2-004 protein_coding Homo_sapiens 0 200
ENST00000535565 RBFOX1-005 protein_coding Homo_sapiens 0 503
ENST00000547338 RBFOX1-008 protein_coding Homo_sapiens 0 1557
ENST00000547372 RBFOX1-010 protein_coding Homo_sapiens 0 1197
ENST00000547605 RBFOX1-014 protein_coding Homo_sapiens 0 981
ENST00000550418 RBFOX1-003 protein_coding Homo_sapiens 0 1559
ENST00000551752 RBFOX1-007 protein_coding Homo_sapiens 0 1000
ENST00000552089 RBFOX1-006 protein_coding Homo_sapiens 0 654
ENST00000553186 RBFOX1-004 protein_coding Homo_sapiens 0 832
ENST00000567470 RBFOX1-018 protein_coding Homo_sapiens 0 466
ENST00000570188 RBFOX1-016 retained_intron Homo_sapiens 0 464
ENST00000570626 RBFOX1-019 protein_coding Homo_sapiens 0 702
ENST00000618140 RBFOX2-201 protein_coding Homo_sapiens 0 311
ENST00000619768 RBFOX2-202 protein_coding Homo_sapiens 0 311
ENST00000620507 RBFOX1-202 protein_coding Homo_sapiens 0 1559

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