C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115841 Rbfox1-202 ENSMUSG00000008658 10090 + 16:6809222-7409813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000115841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000115841 0.066±0.03 1.086±0.28 0.073±0.00 28.821±19.05 2.353±3.77 0.766±0.20 4.539±0.00 1.924±0.19 0.050±0.01 0.880±0.22 1.044±0.28 0.047±0.00 0.150±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EQ CIL_0000EQ_0002 CGP 16:5244152-7412479
CIL_00090F CIL_00090F_0002 VISTA 16:6806398-7407046
CIL_0000EP CIL_0000EP_0002 CGP 16:6809222-8425136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043484 IEA regulation of RNA splicing
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122037 rbfox1-001 protein_coding Danio_rerio 0 436
ENSDART00000150888 rbfox1-005 protein_coding Danio_rerio 0 268
ENST00000262829 RBFOX2-002 protein_coding Homo_sapiens 0 193
ENST00000311745 RBFOX1-001 protein_coding Homo_sapiens 0 1537
ENST00000340209 RBFOX1-201 protein_coding Homo_sapiens 0 1644
ENST00000355637 RBFOX1-002 protein_coding Homo_sapiens 0 1197
ENST00000359369 RBFOX2-006 protein_coding Homo_sapiens 0 311
ENST00000397303 RBFOX2-009 protein_coding Homo_sapiens 0 315
ENST00000405409 RBFOX2-001 protein_coding Homo_sapiens 0 315
ENST00000414461 RBFOX2-010 protein_coding Homo_sapiens 0 311
ENST00000416721 RBFOX2-008 protein_coding Homo_sapiens 0 311
ENST00000422070 RBFOX1-009 protein_coding Homo_sapiens 0 1482
ENST00000436368 RBFOX1-011 protein_coding Homo_sapiens 0 1332
ENST00000438146 RBFOX2-005 protein_coding Homo_sapiens 0 315
ENST00000449924 RBFOX2-003 protein_coding Homo_sapiens 0 311
ENST00000473487 RBFOX2-014 protein_coding Homo_sapiens 0 311
ENST00000495377 RBFOX2-004 protein_coding Homo_sapiens 0 200
ENST00000535565 RBFOX1-005 protein_coding Homo_sapiens 0 612
ENST00000547338 RBFOX1-008 protein_coding Homo_sapiens 0 1687
ENST00000547372 RBFOX1-010 protein_coding Homo_sapiens 0 1347
ENST00000547605 RBFOX1-014 protein_coding Homo_sapiens 0 1024
ENST00000550418 RBFOX1-003 protein_coding Homo_sapiens 0 1687
ENST00000551752 RBFOX1-007 protein_coding Homo_sapiens 0 1042
ENST00000552089 RBFOX1-006 protein_coding Homo_sapiens 0 763
ENST00000553186 RBFOX1-004 protein_coding Homo_sapiens 0 874
ENST00000567470 RBFOX1-018 protein_coding Homo_sapiens 0 444
ENST00000570188 RBFOX1-016 retained_intron Homo_sapiens 0 520
ENST00000570626 RBFOX1-019 protein_coding Homo_sapiens 0 697
ENST00000618140 RBFOX2-201 protein_coding Homo_sapiens 0 311
ENST00000619768 RBFOX2-202 protein_coding Homo_sapiens 0 311
ENST00000620507 RBFOX1-202 protein_coding Homo_sapiens 0 832

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