C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417517 RP11-342M1.6-001 ENSG00000237090 9606 - 1:42891094-42892430 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLungMuscleOvaryTestisENST00000417517
Transcript ID Brain Heart Kidney Lung Muscle Ovary Testis
ENST00000417517 0.033±0.00 0.028±0.00 0.011±0.00 0.047±0.04 0.009±0.00 0.024±0.00 0.033±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0008N2 CIL_0008N2_0001 VISTA 1:42758169-43359178

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031985 Mkrn1-001 protein_coding Mus_musculus 0 1443
ENSMUST00000114823 Mkrn1-004 protein_coding Mus_musculus 0 1426
ENSMUST00000122035 Mkrn1-ps1-001 processed_pseudogene Mus_musculus 0 1327
ENSMUST00000121895 Gm15989-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000150575 Mkrn1-007 protein_coding Mus_musculus 0 460
ENSDART00000061070 mkrn1-001 protein_coding Danio_rerio 0 263
ENSDART00000131244 mkrn1-006 retained_intron Danio_rerio 0 215

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