C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: makorin, ring finger protein, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031985 Mkrn1-001 ENSMUSG00000029922 10090 - 6:39397804-39420462 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031985
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031985 9.092±2.17 11.326±2.25 15.053±0.24 30.691±16.73 10.567±1.31 60.730±6.34 11.009±6.13 11.843±0.26 23.564±20.29 18.022±1.80 2.101±0.70 16.240±4.06 11.833±3.69 58.812±12.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZU CIL_0008ZU_0002 VISTA 6:38939568-39543498
CIL_000305 CIL_000305_0002 CGP 6:39381175-39420462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0003682 IDA chromatin binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0008270 IEA zinc ion binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255977 MKRN1-001 protein_coding Homo_sapiens 0 2891
ENST00000417517 RP11-342M1.6-001 processed_pseudogene Homo_sapiens 0 1443
ENST00000433469 MKRN7P-001 processed_pseudogene Homo_sapiens 0 1077
ENST00000438726 AC009969.1-001 processed_pseudogene Homo_sapiens 0 200
ENST00000443720 MKRN1-002 protein_coding Homo_sapiens 0 1454
ENST00000444706 MKRN4P-001 processed_pseudogene Homo_sapiens 0 1541
ENST00000445263 MKRN5P-001 processed_pseudogene Homo_sapiens 0 1406
ENST00000445872 RP11-535M15.2-001 transcribed_processed_pseudogene Homo_sapiens 0 1437
ENST00000463142 MKRN1-018 protein_coding Homo_sapiens 0 619
ENST00000467513 MKRN1-013 protein_coding Homo_sapiens 0 617
ENST00000468447 MKRN1-017 retained_intron Homo_sapiens 0 865
ENST00000471104 MKRN1-011 protein_coding Homo_sapiens 0 715
ENST00000474576 MKRN1-007 protein_coding Homo_sapiens 0 2043
ENST00000475010 MKRN1-006 retained_intron Homo_sapiens 0 1491
ENST00000480552 MKRN1-015 protein_coding Homo_sapiens 0 346
ENST00000481705 MKRN1-009 processed_transcript Homo_sapiens 0 566
ENST00000494939 MKRN1-014 protein_coding Homo_sapiens 0 510
ENST00000495305 MKRN1-003 nonsense_mediated_decay Homo_sapiens 0 1419
ENST00000496169 MKRN1-005 nonsense_mediated_decay Homo_sapiens 0 1064
ENST00000498535 MKRN1-010 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000546624 MKRN9P-001 transcribed_processed_pseudogene Homo_sapiens 0 1661
ENST00000599191 MKRN9P-002 processed_transcript Homo_sapiens 0 627
ENST00000602289 RP11-535M15.2-003 processed_transcript Homo_sapiens 0 815

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