C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15989
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121895 Gm15989-001 ENSMUSG00000081104 10090 + 5:110905244-110905741 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000121895
Transcript ID Adipose Bladder Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121895 0.299±0.00 0.244±0.16 0.611±0.41 0.457±0.00 0.100±0.00 0.119±0.10 0.149±0.02 0.099±0.00 0.501±0.22 0.154±0.00 1.074±1.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771
CIL_0007W4 CIL_0007W4_0002 VISTA 5:110754482-111355796
CIL_0004YV CIL_0004YV_0002 CGP 5:110879803-111388359

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255977 MKRN1-001 protein_coding Homo_sapiens 0 632
ENST00000417517 RP11-342M1.6-001 processed_pseudogene Homo_sapiens 0 569
ENST00000433469 MKRN7P-001 processed_pseudogene Homo_sapiens 0 337
ENST00000444706 MKRN4P-001 processed_pseudogene Homo_sapiens 0 490
ENST00000445263 MKRN5P-001 processed_pseudogene Homo_sapiens 0 460
ENST00000445872 RP11-535M15.2-001 transcribed_processed_pseudogene Homo_sapiens 0 494
ENST00000463142 MKRN1-018 protein_coding Homo_sapiens 0 424
ENST00000468447 MKRN1-017 retained_intron Homo_sapiens 0 505
ENST00000474576 MKRN1-007 protein_coding Homo_sapiens 0 632
ENST00000475010 MKRN1-006 retained_intron Homo_sapiens 0 427
ENST00000495305 MKRN1-003 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000546624 MKRN9P-001 transcribed_processed_pseudogene Homo_sapiens 0 566
ENST00000602289 RP11-535M15.2-003 processed_transcript Homo_sapiens 0 494

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