C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: makorin, ring finger protein 1, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122035 Mkrn1-ps1-001 ENSMUSG00000082389 10090 - 5:88838009-88839402 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverOvaryTestisENSMUST00000122035
Transcript ID Brain Breast Liver Ovary Testis
ENSMUST00000122035 0.021±0.00 0.067±0.00 0.005±0.00 0.020±0.00 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D8 CIL_0000D8_0002 CGP 5:88764996-89239653

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255977 MKRN1-001 protein_coding Homo_sapiens 0 1663
ENST00000417517 RP11-342M1.6-001 processed_pseudogene Homo_sapiens 0 1327
ENST00000438726 AC009969.1-001 processed_pseudogene Homo_sapiens 2.00386e-43 178
ENST00000443720 MKRN1-002 protein_coding Homo_sapiens 0 1061
ENST00000444706 MKRN4P-001 processed_pseudogene Homo_sapiens 0 1356
ENST00000445263 MKRN5P-001 processed_pseudogene Homo_sapiens 0 1225
ENST00000445872 RP11-535M15.2-001 transcribed_processed_pseudogene Homo_sapiens 0 1293
ENST00000463142 MKRN1-018 protein_coding Homo_sapiens 0 473
ENST00000467513 MKRN1-013 protein_coding Homo_sapiens 0 588
ENST00000468447 MKRN1-017 retained_intron Homo_sapiens 0 737
ENST00000471104 MKRN1-011 protein_coding Homo_sapiens 0 669
ENST00000474576 MKRN1-007 protein_coding Homo_sapiens 0 1589
ENST00000475010 MKRN1-006 retained_intron Homo_sapiens 0 1190
ENST00000480552 MKRN1-015 protein_coding Homo_sapiens 0 318
ENST00000494939 MKRN1-014 protein_coding Homo_sapiens 0 486
ENST00000495305 MKRN1-003 nonsense_mediated_decay Homo_sapiens 0 920
ENST00000496169 MKRN1-005 nonsense_mediated_decay Homo_sapiens 0 990
ENST00000546624 MKRN9P-001 transcribed_processed_pseudogene Homo_sapiens 0 1373
ENST00000602289 RP11-535M15.2-003 processed_transcript Homo_sapiens 0 566

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