C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417882 RPSAP6-001 ENSG00000214629 9606 + 10:74371535-74372416 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000417882
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000417882 0.018±0.00 0.152±0.00 0.074±0.00 0.236±0.19 0.193±0.17 0.409±0.37 0.017±0.00 0.118±0.10 0.091±0.06 0.046±0.01 0.123±0.10 0.045±0.00 0.052±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092U CIL_00092U_0001 VISTA 10:74118007-74719242
CIL_00016K CIL_00016K_0001 CGP 10:74120255-74709303
CIL_00008R CIL_00008R_0001 CGP 10:74151185-75032622

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000162286 Gm16228-001 processed_pseudogene Mus_musculus 0 220

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