C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16228
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162286 Gm16228-001 ENSMUSG00000089627 10090 - 5:99610625-99611433 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyTestisENSMUST00000162286
Transcript ID Brain Kidney Testis
ENSMUST00000162286 0.058±0.04 0.040±0.00 0.099±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G8 CIL_0008G8_0002 VISTA 5:99067893-99670406

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000401872 RP11-506B6.3-001 processed_pseudogene Homo_sapiens 0 213
ENST00000406712 RP3-334F4.1-001 processed_pseudogene Homo_sapiens 0 196
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000414293 RP11-182B22.2-001 transcribed_processed_pseudogene Homo_sapiens 0 228
ENST00000415189 AL160471.6-001 processed_pseudogene Homo_sapiens 2e-39 167
ENST00000417882 RPSAP6-001 processed_pseudogene Homo_sapiens 0 220
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 254
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 267
ENST00000432681 RPSAP32-001 processed_pseudogene Homo_sapiens 3e-30 135
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 228
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 254
ENST00000437188 AC074008.1-001 processed_pseudogene Homo_sapiens 4.00001e-41 172
ENST00000437336 RP11-350G8.3-001 processed_pseudogene Homo_sapiens 0 254
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 219
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 211
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 248
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 228
ENST00000447583 RP11-533E19.3-001 processed_pseudogene Homo_sapiens 1e-36 158
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 244
ENST00000456871 RP11-398C13.2-001 processed_pseudogene Homo_sapiens 0 217
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 248
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 248
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 237
ENST00000467439 RP11-162K6.1-001 processed_pseudogene Homo_sapiens 0 235
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 5.60519e-45 185
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 265
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 215
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 231
ENST00000489520 RPSAP52-002 processed_transcript Homo_sapiens 0 191
ENST00000493929 RPSAP52-001 transcribed_processed_pseudogene Homo_sapiens 0 191
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 237
ENST00000590033 RPSAP57-001 processed_pseudogene Homo_sapiens 7e-39 165
ENST00000625020 bP-2168N6.2-001 processed_pseudogene Homo_sapiens 7e-26 121

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