C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC condensin II complex, subunit H2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420993 NCAPH2-001 ENSG00000025770 9606 + 22:50508216-50523472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000420993
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000420993 7.358±0.00 11.798±0.00 5.703±4.66 10.197±0.00 5.542±4.59 6.252±0.00 0.432±0.00 2.923±0.00 10.933±0.00 20.935±6.41 19.963±3.81 25.158±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026C CIL_00026C_0001 CGP 22:50502949-50523472
CIL_0000V1 CIL_0000V1_0002 CGP 22:50508216-50526439

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0016020 IDA membrane
GO:0030261 IEA chromosome condensation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074552 Ncaph2-001 protein_coding Mus_musculus 0 1382
ENSMUST00000088717 Ncaph2-002 protein_coding Mus_musculus 0 1378
ENSMUST00000145259 Ncaph2-003 nonsense_mediated_decay Mus_musculus 0 1277
ENSMUST00000036987 Ncaph2-004 protein_coding Mus_musculus 0 1229
ENSMUST00000147733 Ncaph2-012 retained_intron Mus_musculus 0 481
ENSMUST00000147207 Ncaph2-009 retained_intron Mus_musculus 0 425
ENSMUST00000141643 Ncaph2-006 retained_intron Mus_musculus 0 398
ENSMUST00000140665 Ncaph2-013 retained_intron Mus_musculus 0 344
ENSMUST00000151523 Ncaph2-010 retained_intron Mus_musculus 0 326
ENSMUST00000145793 Ncaph2-007 retained_intron Mus_musculus 0 257

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