C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactation elevated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421954 LACE1-006 ENSG00000135537 9606 + 6:108295201-108523117 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000421954
Transcript ID Adrenal Bladder Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000421954 0.144±0.00 0.475±0.00 0.337±0.00 0.702±0.00 0.592±0.00 0.491±0.00 0.146±0.01 0.856±0.30 0.440±0.13 6.055±4.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377
CIL_0008G4 CIL_0008G4_0001 VISTA 6:107814126-108415302
CIL_0009BP CIL_0009BP_0001 VISTA 6:107816039-108417248
CIL_0008YH CIL_0008YH_0001 VISTA 6:108288605-108890079
CIL_0001OT CIL_0001OT_0002 CGP 6:108294894-108684774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151747 Lace1-002 protein_coding Mus_musculus 0 1343
ENSMUST00000041024 Lace1-001 protein_coding Mus_musculus 0 1328
ENSMUST00000133326 Lace1-003 nonsense_mediated_decay Mus_musculus 0 797
ENSMUST00000149832 Lace1-004 nonsense_mediated_decay Mus_musculus 0 684

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