C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008YH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2394 VISTA 9606 6:108288605-108890079
GeneTranscriptPositionBiotype
ENSG00000118689 (FOXO3)
forkhead box O3 		ENST00000343882 (FOXO3-001) 108559835-108684774 protein_coding
ENST00000406360 (FOXO3-201) 108560866-108684768 protein_coding
ENST00000540898 (FOXO3-202) 108656346-108680751 protein_coding
ENSG00000118690 (ARMC2)
armadillo repeat containing 2 		ENST00000237512 (ARMC2-004) 108848697-108876347 protein_coding
ENST00000368972 (ARMC2-201) 108848416-108974472 protein_coding
ENST00000392644 (ARMC2-001) 108848422-108973983 protein_coding
ENST00000414610 (ARMC2-003) 108868978-108880256 protein_coding
ENST00000481850 (ARMC2-002) 108959460-108965117 processed_transcript
ENSG00000135537 (LACE1)
lactation elevated 1 		ENST00000368977 (LACE1-001) 108294894-108526001 protein_coding
ENST00000421954 (LACE1-006) 108295201-108523117 protein_coding
ENST00000430458 (LACE1-004) 108294991-108346990 processed_transcript
ENST00000431865 (LACE1-002) 108356690-108522334 nonsense_mediated_decay
ENST00000437715 (LACE1-007) 108295753-108356751 protein_coding
ENST00000481842 (LACE1-005) 108523137-108526796 processed_transcript
ENST00000486863 (LACE1-003) 108476979-108522465 retained_intron
ENSG00000203801 (LINC00222)
long intergenic non-protein coding RNA 222 		ENST00000368974 (LINC00222-007) 108759165-108769118 lincRNA
ENST00000416104 (LINC00222-003) 108751654-108768456 lincRNA
ENST00000416890 (LINC00222-005) 108751818-108768456 lincRNA
ENST00000417773 (LINC00222-006) 108759161-108769118 lincRNA
ENST00000430898 (LINC00222-001) 108759461-108769005 lincRNA
ENST00000444910 (LINC00222-002) 108751654-108769118 lincRNA
ENST00000448744 (LINC00222-004) 108751656-108769942 lincRNA
ENSG00000218872 (RP11-249L21.2)
 ENST00000405722 (RP11-249L21.2-001) 108856400-108856737 processed_pseudogene
ENSG00000219565 (ZNF259P1)
zinc finger protein 259 pseudogene 1 		ENST00000407656 (ZNF259P1-001) 108785689-108787053 transcribed_processed_pseudogene
ENST00000572422 (ZNF259P1-002) 108782126-108787037 processed_transcript
ENSG00000227072 (RP3-466I7.1)
 ENST00000436728 (RP3-466I7.1-001) 108387512-108388080 processed_pseudogene
ENSG00000228976 (SUMO2P8)
SUMO2 pseudogene 8 		ENST00000434672 (SUMO2P8-001) 108618000-108618285 processed_pseudogene
ENSG00000231559 (RP3-354J5.3)
 ENST00000421372 (RP3-354J5.3-001) 108817680-108817926 processed_pseudogene
ENSG00000238055 (RP1-128O3.6)
 ENST00000418637 (RP1-128O3.6-001) 108318079-108318404 processed_pseudogene
ENSG00000238079 (RP11-72I2.1)
 ENST00000442911 (RP11-72I2.1-001) 108372772-108372927 processed_pseudogene
ENSG00000271608 (RP11-697G4.4)
 ENST00000603860 (RP11-697G4.4-001) 108551018-108551207 processed_pseudogene
ENSG00000279498 (RP11-72I2.2)
 ENST00000624715 (RP11-72I2.2-001) 108359084-108359863 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008YH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2394 VISTA 10090 10:41950904-42552282
GeneTranscriptPositionBiotype
ENSMUSG00000019804 (Snx3)
sorting nexin 3 		ENSMUST00000019939 (Snx3-001) 42502031-42535370 protein_coding
ENSMUST00000105499 (Snx3-003) 42502290-42535381 protein_coding
ENSMUST00000105500 (Snx3-002) 42502030-42534787 protein_coding
ENSMUSG00000038302 (Lace1)
lactation elevated 1 		ENSMUST00000041024 (Lace1-001) 42312585-42478565 protein_coding
ENSMUST00000133326 (Lace1-003) 42312588-42478415 nonsense_mediated_decay
ENSMUST00000149832 (Lace1-004) 42313582-42425308 nonsense_mediated_decay
ENSMUST00000151747 (Lace1-002) 42312585-42478280 protein_coding
ENSMUSG00000048756 (Foxo3)
forkhead box O3 		ENSMUST00000056974 (Foxo3-002) 42185786-42276742 protein_coding
ENSMUST00000105501 (Foxo3-003) 42247431-42276755 protein_coding
ENSMUST00000105502 (Foxo3-001) 42181841-42276752 protein_coding
ENSMUST00000175881 (Foxo3-004) 42196268-42276696 protein_coding
ENSMUST00000177542 (Foxo3-005) 42197554-42258366 protein_coding
ENSMUSG00000071324 (Armc2)
armadillo repeat containing 2 		ENSMUST00000095729 (Armc2-201) 41915000-42018382 protein_coding
ENSMUST00000105503 (Armc2-006) 41914993-41976744 retained_intron
ENSMUST00000160262 (Armc2-001) 41914990-42018436 protein_coding
ENSMUST00000160367 (Armc2-007) 41916051-41976122 retained_intron
ENSMUST00000161081 (Armc2-003) 42000349-42018382 protein_coding
ENSMUST00000161167 (Armc2-005) 41986614-41993166 protein_coding
ENSMUST00000161927 (Armc2-002) 41916807-42018442 nonsense_mediated_decay
ENSMUST00000162405 (Armc2-004) 41999808-42018380 protein_coding
ENSMUSG00000081873 (Gm15197)
predicted gene 15197 		ENSMUST00000120526 (Gm15197-001) 42330786-42331263 processed_pseudogene
ENSMUSG00000083429 (Gm15198)
predicted gene 15198 		ENSMUST00000117283 (Gm15198-001) 42435880-42436065 processed_pseudogene
ENSMUSG00000085666 (Gm9855)
predicted pseudogene 9855 		ENSMUST00000121229 (Gm9855-001) 42054113-42055306 processed_pseudogene
ENSMUSG00000087891 (Gm25277)
predicted gene, 25277 		ENSMUST00000157266 (Gm25277-201) 42493423-42493746 misc_RNA
ENSMUSG00000088165 (Gm23533)
predicted gene, 23533 		ENSMUST00000157540 (Gm23533-201) 42309775-42310019 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YH_0001ENSG00000118689ENST00000343882ENST00000406360ENST00000540898ENSG00000118690ENST00000237512ENST00000368972ENST00000392644ENST00000414610ENST00000481850ENSG00000135537ENST00000368977ENST00000421954ENST00000430458ENST00000431865ENST00000437715ENST00000481842ENST00000486863ENSG00000203801ENST00000368974ENST00000416104ENST00000416890ENST00000417773ENST00000430898ENST00000444910ENST00000448744ENSG00000218872ENST00000405722ENSG00000219565ENST00000407656ENST00000572422ENSG00000227072ENST00000436728ENSG00000228976ENST00000434672ENSG00000231559ENST00000421372ENSG00000238055ENST00000418637ENSG00000238079ENST00000442911ENSG00000271608ENST00000603860ENSG00000279498ENST00000624715CIL_0008YH_0002ENSMUSG00000019804ENSMUST00000019939ENSMUST00000105499ENSMUST00000105500ENSMUSG00000038302ENSMUST00000041024ENSMUST00000133326ENSMUST00000149832ENSMUST00000151747ENSMUSG00000048756ENSMUST00000056974ENSMUST00000105501ENSMUST00000105502ENSMUST00000175881ENSMUST00000177542ENSMUSG00000071324ENSMUST00000095729ENSMUST00000105503ENSMUST00000160262ENSMUST00000160367ENSMUST00000161081ENSMUST00000161167ENSMUST00000161927ENSMUST00000162405ENSMUSG00000081873ENSMUST00000120526ENSMUSG00000083429ENSMUST00000117283ENSMUSG00000085666ENSMUST00000121229ENSMUSG00000087891ENSMUST00000157266ENSMUSG00000088165ENSMUST00000157540
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YH_0001ENSG00000118689ENST00000343882ENST00000406360ENSG00000118690ENST00000237512ENST00000368972ENST00000392644ENST00000414610ENST00000481850ENSG00000135537ENST00000368977ENST00000421954ENST00000430458ENST00000431865ENST00000437715ENST00000486863ENSG00000203801ENST00000368974ENST00000416104ENST00000416890ENST00000417773ENST00000430898ENST00000448744ENSG00000218872ENST00000405722ENSG00000219565ENST00000407656ENST00000572422ENSG00000227072ENST00000436728ENSG00000228976ENST00000434672ENSG00000231559ENST00000421372ENSG00000238055ENST00000418637ENSG00000238079ENST00000442911ENSG00000271608ENST00000603860ENSG00000279498ENST00000624715CIL_0008YH_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118689 ENST00000343882 12.795±0.00 N/A 1.866±0.00 9.585±4.92 7.668±2.91 2.963±2.31 5.964±4.79 5.795±3.51 3.598±0.69 11.118±6.06 14.902±8.56 5.492±2.47 2.081±0.79 6.016±3.94
ENST00000406360 3.813±0.00 N/A N/A N/A N/A 2.483±0.00 2.611±0.00 N/A 2.478±0.00 2.712±0.31 7.316±0.00 3.857±1.63 2.028±0.09 N/A
ENST00000540898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000118690 ENST00000237512 0.434±0.00 N/A N/A 2.834±2.00 0.337±0.00 0.338±0.14 1.102±0.00 0.053±0.00 0.428±0.27 1.508±0.00 0.296±0.00 N/A 1.211±0.00 17.911±0.00
ENST00000368972 N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A 0.184±0.00 0.385±0.00 N/A 0.287±0.05 0.041±0.00 N/A
ENST00000392644 0.127±0.00 0.202±0.00 N/A 0.583±0.19 0.052±0.00 N/A 0.170±0.00 0.149±0.13 0.237±0.21 0.272±0.00 0.063±0.00 0.855±0.20 0.140±0.03 7.596±2.60
ENST00000414610 N/A N/A N/A N/A 0.275±0.00 N/A N/A 0.427±0.00 N/A N/A 0.218±0.00 1.693±0.00 0.335±0.00 N/A
ENST00000481850 N/A N/A N/A N/A 0.599±0.00 3.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135537 ENST00000368977 0.148±0.00 0.206±0.00 N/A 0.839±0.59 0.604±0.00 0.235±0.00 0.370±0.08 0.466±0.00 0.130±0.00 N/A 0.038±0.00 0.287±0.11 0.234±0.08 0.407±0.00
ENST00000421954 N/A 0.144±0.00 0.475±0.00 N/A 0.337±0.00 0.702±0.00 0.592±0.00 N/A N/A 0.491±0.00 0.146±0.01 0.856±0.30 0.440±0.13 6.055±4.22
ENST00000430458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.902±0.00 3.088±0.00 1.646±0.00 N/A
ENST00000431865 0.996±0.00 0.738±0.00 N/A N/A 1.663±0.00 1.350±0.00 0.650±0.00 1.877±0.00 1.514±0.00 N/A 0.765±0.00 1.536±0.69 1.592±0.00 16.552±9.28
ENST00000437715 0.458±0.00 N/A N/A N/A N/A N/A 1.185±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000481842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486863 N/A 0.120±0.00 0.120±0.00 N/A N/A N/A N/A 0.213±0.00 0.230±0.00 N/A 0.162±0.00 N/A N/A N/A
ENSG00000203801 ENST00000368974 N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416104 0.021±0.00 0.041±0.00 N/A N/A 0.092±0.00 N/A 0.018±0.00 N/A 0.323±0.00 N/A 0.098±0.00 0.077±0.10 N/A 0.115±0.00
ENST00000416890 0.033±0.00 0.048±0.00 0.122±0.00 0.064±0.00 N/A N/A 0.034±0.00 0.469±0.00 0.211±0.00 0.423±0.00 N/A N/A N/A 0.164±0.00
ENST00000417773 N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A 0.060±0.00
ENST00000430898 0.119±0.00 N/A N/A N/A N/A N/A 0.094±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000444910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448744 N/A N/A N/A N/A 0.048±0.00 N/A 0.026±0.00 N/A 0.184±0.00 0.114±0.00 N/A 0.071±0.02 N/A 0.097±0.00
ENSG00000218872 ENST00000405722 N/A N/A N/A 0.178±0.00 N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000219565 ENST00000407656 N/A N/A N/A N/A 0.013±0.00 N/A 0.034±0.00 0.157±0.00 N/A 0.078±0.00 0.040±0.00 N/A N/A N/A
ENST00000572422 N/A 0.009±0.00 0.052±0.00 0.028±0.02 0.056±0.00 0.109±0.00 0.072±0.04 0.013±0.01 0.080±0.02 0.151±0.00 0.003±0.00 0.009±0.00 0.007±0.00 0.018±0.01
ENSG00000227072 ENST00000436728 N/A N/A N/A N/A N/A N/A N/A 0.210±0.00 0.396±0.00 N/A N/A 0.046±0.00 N/A 0.228±0.11
ENSG00000228976 ENST00000434672 N/A 0.136±0.00 3.513±0.00 0.120±0.07 0.044±0.00 0.372±0.00 0.333±0.00 0.313±0.00 0.040±0.00 0.042±0.00 N/A 5.758±0.00 N/A 0.173±0.01
ENSG00000231559 ENST00000421372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A 0.099±0.00
ENSG00000238055 ENST00000418637 N/A 0.498±0.00 N/A 0.208±0.02 1.755±1.30 0.903±0.00 0.368±0.25 N/A 0.041±0.00 0.044±0.00 N/A 0.659±0.13 0.077±0.00 0.458±0.00
ENSG00000238079 ENST00000442911 N/A N/A N/A 0.385±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271608 ENST00000603860 N/A N/A N/A N/A N/A N/A N/A 0.375±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000279498 ENST00000624715 N/A 0.016±0.00 N/A N/A 0.384±0.00 N/A 0.046±0.00 N/A 0.441±0.00 N/A N/A 0.078±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019804 ENSMUST00000019939 59.283±10.28 75.874±16.70 76.211±21.50 46.606±8.24 53.838±14.14 63.885±8.46 30.297±2.02 61.353±10.25 54.171±36.69 70.179±15.35 48.203±3.87 64.053±14.72 102.242±47.27 110.235±42.11
ENSMUST00000105499 74.557±8.71 43.837±16.41 35.267±12.66 55.060±13.98 112.379±62.81 47.199±16.46 82.786±2.27 119.001±16.83 64.214±20.88 93.060±35.55 8.896±2.24 64.373±16.22 74.647±25.66 43.771±11.01
ENSMUST00000105500 N/A N/A N/A 13.998±0.00 N/A N/A N/A N/A N/A N/A N/A 27.593±0.00 32.836±11.54 48.283±0.00
ENSMUSG00000038302 ENSMUST00000041024 3.914±0.68 8.285±1.47 2.005±0.22 1.753±1.29 4.511±0.75 4.084±1.42 4.486±0.77 4.617±0.66 1.269±0.43 2.559±0.51 4.271±0.55 3.205±1.37 3.898±1.14 0.410±0.19
ENSMUST00000133326 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A N/A
ENSMUST00000149832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151747 2.512±0.46 N/A 2.844±0.23 0.319±0.00 5.025±2.52 N/A 9.031±0.90 5.921±1.72 1.240±0.52 1.082±0.00 1.052±0.12 2.167±0.25 1.588±0.92 0.497±0.27
ENSMUSG00000048756 ENSMUST00000056974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.291±0.59
ENSMUST00000105501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000105502 9.198±3.94 13.244±0.82 6.676±0.78 4.042±0.46 8.831±3.13 24.677±0.93 5.462±0.67 6.960±1.59 6.651±2.84 18.854±3.37 2.550±0.51 14.622±4.27 3.184±1.90 1.295±0.00
ENSMUST00000175881 N/A 9.623±3.02 N/A N/A 8.351±1.34 N/A N/A 4.615±0.00 2.916±0.05 N/A N/A 11.926±5.40 N/A N/A
ENSMUST00000177542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071324 ENSMUST00000095729 0.053±0.01 0.149±0.00 0.114±0.00 0.635±0.34 0.044±0.00 0.064±0.01 N/A 0.054±0.04 0.027±0.00 0.265±0.12 N/A 0.310±0.14 0.035±0.00 3.635±0.76
ENSMUST00000105503 0.047±0.01 0.123±0.00 0.077±0.01 0.235±0.09 0.057±0.02 0.037±0.00 N/A 0.035±0.00 0.012±0.00 0.184±0.06 0.029±0.00 0.208±0.09 0.038±0.02 N/A
ENSMUST00000160262 0.038±0.02 N/A N/A N/A 0.069±0.02 N/A N/A 0.068±0.03 0.012±0.00 N/A 0.027±0.02 0.298±0.20 0.028±0.01 N/A
ENSMUST00000160367 N/A 0.275±0.15 N/A N/A 0.044±0.01 0.057±0.00 N/A 0.036±0.00 0.017±0.00 0.156±0.00 0.011±0.00 0.388±0.12 N/A N/A
ENSMUST00000161081 N/A 0.788±0.00 N/A N/A 0.529±0.12 0.367±0.12 N/A 0.088±0.00 N/A N/A 0.084±0.00 1.508±0.00 N/A N/A
ENSMUST00000161167 0.328±0.01 0.696±0.00 N/A N/A 0.176±0.00 0.170±0.00 N/A 0.135±0.06 N/A N/A 0.191±0.09 N/A 0.185±0.06 N/A
ENSMUST00000161927 0.056±0.02 0.086±0.02 0.139±0.00 N/A 0.090±0.03 0.106±0.02 N/A 0.033±0.00 N/A 0.257±0.00 0.015±0.01 0.366±0.10 0.063±0.05 5.362±1.37
ENSMUST00000162405 0.139±0.00 0.300±0.05 0.310±0.00 N/A N/A 0.378±0.08 N/A 0.162±0.07 0.030±0.00 N/A N/A N/A 0.097±0.02 N/A
ENSMUSG00000081873 ENSMUST00000120526 0.084±0.00 0.483±0.35 0.086±0.06 0.069±0.04 0.219±0.07 0.640±0.21 0.160±0.00 0.236±0.23 0.106±0.04 0.669±0.27 0.168±0.00 0.247±0.10 0.111±0.07 N/A
ENSMUSG00000083429 ENSMUST00000117283 14.499±0.82 N/A N/A N/A 9.014±0.00 4.601±0.00 N/A 2.159±0.00 1.063±0.42 N/A N/A 2.040±0.00 8.042±6.31 N/A
ENSMUSG00000085666 ENSMUST00000121229 0.041±0.00 0.154±0.05 0.143±0.11 3.595±4.00 N/A 0.081±0.00 0.051±0.02 0.050±0.02 0.263±0.26 0.050±0.00 N/A 0.033±0.00 3.582±4.51 0.983±0.95
ENSMUSG00000087891 ENSMUST00000157266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A
ENSMUSG00000088165 ENSMUST00000157540 N/A N/A 0.110±0.00 N/A 0.450±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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