C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lactation elevated 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135537 LACE1 9606 + 6:108294894-108526796 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368977 LACE1-001 108294894-108526001 protein_coding
  ENST00000421954 LACE1-006 108295201-108523117 protein_coding
  ENST00000430458 LACE1-004 108294991-108346990 processed_transcript
  ENST00000431865 LACE1-002 108356690-108522334 nonsense_mediated_decay
  ENST00000437715 LACE1-007 108295753-108356751 protein_coding
  ENST00000481842 LACE1-005 108523137-108526796 processed_transcript
  ENST00000486863 LACE1-003 108476979-108522465 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368977ENST00000421954ENST00000430458ENST00000431865ENST00000437715ENST00000486863
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368977 0.148±0.00 0.206±0.00 N/A 0.839±0.59 0.604±0.00 0.235±0.00 0.370±0.08 0.466±0.00 0.130±0.00 N/A 0.038±0.00 0.287±0.11 0.234±0.08 0.407±0.00
ENST00000421954 N/A 0.144±0.00 0.475±0.00 N/A 0.337±0.00 0.702±0.00 0.592±0.00 N/A N/A 0.491±0.00 0.146±0.01 0.856±0.30 0.440±0.13 6.055±4.22
ENST00000430458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.902±0.00 3.088±0.00 1.646±0.00 N/A
ENST00000431865 0.996±0.00 0.738±0.00 N/A N/A 1.663±0.00 1.350±0.00 0.650±0.00 1.877±0.00 1.514±0.00 N/A 0.765±0.00 1.536±0.69 1.592±0.00 16.552±9.28
ENST00000437715 0.458±0.00 N/A N/A N/A N/A N/A 1.185±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000486863 N/A 0.120±0.00 0.120±0.00 N/A N/A N/A N/A 0.213±0.00 0.230±0.00 N/A 0.162±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377
CIL_0008G4 CIL_0008G4_0001 VISTA 6:107814126-108415302
CIL_0009BP CIL_0009BP_0001 VISTA 6:107816039-108417248
CIL_0008YH CIL_0008YH_0001 VISTA 6:108288605-108890079
CIL_0001OT CIL_0001OT_0002 CGP 6:108294894-108684774

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011466 lace1a lactation elevated 1a protein_coding Danio_rerio
ENSMUSG00000038302 Lace1 lactation elevated 1 protein_coding Mus_musculus

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