C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25 (aspartate/glutamate carrier), member 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422440 SLC25A12-001 ENSG00000115840 9606 - 2:171784370-171894252 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000422440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000422440 2.903±0.00 5.274±0.00 2.606±0.00 15.159±2.12 3.850±0.16 5.826±0.00 15.622±3.39 6.418±0.00 1.489±0.97 1.007±0.36 9.564±2.04 3.906±1.30 1.545±0.77 3.713±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RB CIL_0007RB_0001 VISTA 2:171663732-172264836
CIL_0008A7 CIL_0008A7_0001 VISTA 2:171663843-172264792
CIL_0007RB CIL_0007RB_0002 VISTA 2:171664837-172267307
CIL_00062P CIL_00062P_0002 CGP 2:171687409-171999859
CIL_0007JJ CIL_0007JJ_0001 UCNEbase 2:171723627-171935515
CIL_0008C9 CIL_0008C9_0001 VISTA 2:171771791-172373521
CIL_0009AY CIL_0009AY_0001 VISTA 2:171783051-172384518
CIL_0004K0 CIL_0004K0_0001 CGP 2:171784370-171999859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005509 IDA:IEA calcium ion binding
GO:0005739 IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006006 TAS glucose metabolic process
GO:0006094 TAS gluconeogenesis
GO:0015183 IDA L-aspartate transmembrane transporter activity
GO:0015810 IDA aspartate transport
GO:0015813 IDA L-glutamate transport
GO:0016021 NAS integral component of membrane
GO:0043490 IDA malate-aspartate shuttle
GO:0044281 TAS small molecule metabolic process
GO:0051592 IDA response to calcium ion
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151937 Slc25a12-001 protein_coding Mus_musculus 0 2470
ENSMUST00000184169 Slc25a12-002 nonsense_mediated_decay Mus_musculus 0 1956
ENSMUST00000147553 Slc25a12-005 processed_transcript Mus_musculus 0 963
ENSMUST00000126493 Slc25a12-003 processed_transcript Mus_musculus 0 375
ENSMUST00000146653 Slc25a12-007 processed_transcript Mus_musculus 2.00386e-43 182

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