C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Alstrom syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423048 ALMS1-003 ENSG00000116127 9606 + 2:73451697-73573580 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423048
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423048 0.954±0.00 0.358±0.00 1.142±0.00 1.666±0.95 2.377±0.00 0.999±0.52 0.639±0.49 0.709±0.16 2.654±0.00 1.482±1.00 0.459±0.00 1.310±0.75 0.284±0.09 10.248±4.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EB CIL_0003EB_0001 CGP 2:73290929-73610793
CIL_0000LA CIL_0000LA_0001 CGP 2:73385758-73642393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016197 IEA endosomal transport
GO:0051492 IEA regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072018 Alms1-001 protein_coding Mus_musculus 0 1210

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